Detailed information of evm.model.Ap1.3412 in Astrangia poculata

Genomic Location: Ap1:35062927...35067003
NR annotation: XP_020630164.1, leucine-rich repeat extensin-like protein 3, partial [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9061172 kDa type IV collagenase OS=Gallus gallus OX=9031 GN=MMP2 PE=1 SV=1
P3343472 kDa type IV collagenase OS=Mus musculus OX=10090 GN=Mmp2 PE=1 SV=1
O18733Matrix metalloproteinase-9 OS=Canis lupus familiaris OX=9615 GN=MMP9 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000377 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00040
all species →		fn2Fibronectin type II domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000562
all species →		DomainFibronectin type II domainInterproscan
IPR051666
all species →		FamilySeminal Plasma Capacitation RegulatorInterproscan
IPR036943
all species →		Homologous_superfamilyFibronectin type II domain superfamilyInterproscan
IPR013806
all species →		Homologous_superfamilyKringle-like foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22918
all species →		SEMINAL PLASMA PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008201
all species →		Molecular Functionheparin bindingInterproscan
GO:0009986
all species →		Cellular Componentcell surfaceInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.3412.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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