Detailed information of evm.model.Ap1.3417 in Astrangia poculata

Genomic Location: Ap1:35111412...35141733
NR annotation: XP_020630117.1, vacuolar protein sorting-associated protein 13B-like isoform X3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7Z7G8Intermembrane lipid transfer protein VPS13B OS=Homo sapiens OX=9606 GN=VPS13B PE=1 SV=2
Q80TY5Intermembrane lipid transfer protein VPS13B OS=Mus musculus OX=10090 GN=Vps13b PE=1 SV=3
Q5H8C4Intermembrane lipid transfer protein VPS13A OS=Mus musculus OX=10090 GN=Vps13a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003058 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16909
all species →
VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF16908
all species →
VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan
PF12624
all species →
Chorein_NVPS13-like, N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039782
all species →
FamilyIntermembrane lipid transfer protein VPS13BInterproscan
IPR031645
all species →
DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR031646
all species →
DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR026854
all species →
DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12517
all species →
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13BInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap1.3417. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.3417.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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