Gene detail

Detailed information of evm.model.Ap1.3425 in Astrangia poculata

Genomic Location: Ap1:35243695...35258482
NR annotation: KAJ7334553.1, Protein O-mannosyl-transferase 1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3425

atgtccagtgagttggcaaactctagtgacgtcgacaaaaggccaagtgagcccgattctgagcaaaatcttaccaaactttccaatgatcacaaagttcaggaagaagatttacaaaagttagaggaaaagaaaaaacagagagagtatattgaaagagaaacttcaccacctttcgccatgaacattgagttgaattttgtttggctgattcttgtgggcttgtcatttggtacaagaatgtggcagctaacaactcctaaacatgtcatatttgatgaggtgcattttggccagttcacaaattttttcatgcagaacaagtacttctttgatgtacaccctcctttaggaaaacttatgttcgccctaacagcttacctatctggatatgatggccagtttacatttgcagatataggccaagatcttggtgaatatgagccacttgtatggtatttacggtttgtctcggcacttcttggaagtcttgttgtgccaatcgtttatgagatcatcatagaacttggttgttctcactgggcggctgctctgggtgcatttttggcaacatttgataacatgtttgtggtacaaagcagactcattatgttagatggccctctcctgtttttcagtgctgcatccctcctctgttacctcaagtttcacaaagaatccaacagaccattcacacaagcttggtggacatggctgtttttaacaggcattgctctgttgggtgcttacagcactaaatacactggcatcttcacatttttcactgttggatttttaactggccgagacttgtggaaactaattggaaaccactctcttccatcaagagagcttgccaggcatgtgataagccgggtggcctgtctcatcgtctttcctgctatgctgtacctgctgcagttttacattctgtttgctgttgcaaggaagactggtccacatgacgacatgatgtcaagtgcatttcaagccagtcttgagggaggactggctaagattacacatggtcaaccagatgaggtagcatatggttctcagatcaccttacggaacacttttggcaagcagtgctggctccactctcacacacatacctaccccgtcaagtatcctgatgggcgtggcagctctgcacaacagcaggtcacgtgctatggctttaaggatgtcaataactggtggattgtcaaagaccctaaatacgacgcccttactgtggattatccaccaagacctgttcacaatggtgacatcattcagattgtgcatggagtgactggcagagctttaaacagtcatgatgttgccgctccattgaacccagccaaccaggaagtatcgtgttacattgactacaatatttccatggctgctcaaaacctgtggaaagtggaaataattaatccggatgccagcaacatttggaaaaccattcactcgcaagttcgactcattcatgttaatacttctcaggctgtaaagatatctgggatgcagttaccagaatggggtttcagccagcttgaagtttgcacagataaatccatcaaacagtcaaacacaatctggaacgtcgaggaacaccaacaaaacataacttaccctgagggtcaaggtccaaaagaggttgaaaagaaaacggagcaactggaaagagcgttcaagccaatgcctttcctttctaaattttgggagatacagcttaaaatgttggagtccagcaaggagctttctaacgaacacacgtttggttcccgtccttcgtggtggcctctaatgagaagaggagtggcattttggattgctaaagaaaacaatgctcaaatattttgtattggcaatccatttgtgtggtgggcaaccacactgtctctgcctgtgtatctcgggcttttaggattttatttattgaggagaagaaggaaggtgtacgacttgtccaaagattcatggcagcagtttttgttctgcggtgaagctgtcgtggtaggatacctttttcacttcatcacattcttccccatggaaagaacactgttcattcatcactaccttcccgcgctcttcttcaaaattgttctcctgccagtgatgttagaacatgttcatcaagaaatctttagatacaaagcacttcggcggatgttgtacgcgtgttgtgccttcttgattattattgtcctgtggggatttcatttctacagccctttcacatacggtcacgtggcgctctcctctgctgacatcaaccgacggaaatggcttagtacatgggacatgctctctcatcccaacacgtaa

Transcript

evm.model.Ap1.3425

ATGTCCAGTGAGTTGGCAAACTCTAGTGACGTCGACAAAAGGCCAAGTGAGCCCGATTCTGAGCAAAATCTTACCAAACTTTCCAATGATCACAAAGTTCAGGAAGAAGATTTACAAAAGTTAGAGGAAAAGAAAAAACAGAGAGAGTATATTGAAAGAGAAACTTCACCACCTTTCGCCATGAACATTGAGTTGAATTTTGTTTGGCTGATTCTTGTGGGCTTGTCATTTGGTACAAGAATGTGGCAGCTAACAACTCCTAAACATGTCATATTTGATGAGGTGCATTTTGGCCAGTTCACAAATTTTTTCATGCAGAACAAGTACTTCTTTGATGTACACCCTCCTTTAGGAAAACTTATGTTCGCCCTAACAGCTTACCTATCTGGATATGATGGCCAGTTTACATTTGCAGATATAGGCCAAGATCTTGGTGAATATGAGCCACTTGTATGGTATTTACGGTTTGTCTCGGCACTTCTTGGAAGTCTTGTTGTGCCAATCGTTTATGAGATCATCATAGAACTTGGTTGTTCTCACTGGGCGGCTGCTCTGGGTGCATTTTTGGCAACATTTGATAACATGTTTGTGGTACAAAGCAGACTCATTATGTTAGATGGCCCTCTCCTGTTTTTCAGTGCTGCATCCCTCCTCTGTTACCTCAAGTTTCACAAAGAATCCAACAGACCATTCACACAAGCTTGGTGGACATGGCTGTTTTTAACAGGCATTGCTCTGTTGGGTGCTTACAGCACTAAATACACTGGCATCTTCACATTTTTCACTGTTGGATTTTTAACTGGCCGAGACTTGTGGAAACTAATTGGAAACCACTCTCTTCCATCAAGAGAGCTTGCCAGGCATGTGATAAGCCGGGTGGCCTGTCTCATCGTCTTTCCTGCTATGCTGTACCTGCTGCAGTTTTACATTCTGTTTGCTGTTGCAAGGAAGACTGGTCCACATGACGACATGATGTCAAGTGCATTTCAAGCCAGTCTTGAGGGAGGACTGGCTAAGATTACACATGGTCAACCAGATGAGGTAGCATATGGTTCTCAGATCACCTTACGGAACACTTTTGGCAAGCAGTGCTGGCTCCACTCTCACACACATACCTACCCCGTCAAGTATCCTGATGGGCGTGGCAGCTCTGCACAACAGCAGGTCACGTGCTATGGCTTTAAGGATGTCAATAACTGGTGGATTGTCAAAGACCCTAAATACGACGCCCTTACTGTGGATTATCCACCAAGACCTGTTCACAATGGTGACATCATTCAGATTGTGCATGGAGTGACTGGCAGAGCTTTAAACAGTCATGATGTTGCCGCTCCATTGAACCCAGCCAACCAGGAAGTATCGTGTTACATTGACTACAATATTTCCATGGCTGCTCAAAACCTGTGGAAAGTGGAAATAATTAATCCGGATGCCAGCAACATTTGGAAAACCATTCACTCGCAAGTTCGACTCATTCATGTTAATACTTCTCAGGCTGTAAAGATATCTGGGATGCAGTTACCAGAATGGGGTTTCAGCCAGCTTGAAGTTTGCACAGATAAATCCATCAAACAGTCAAACACAATCTGGAACGTCGAGGAACACCAACAAAACATAACTTACCCTGAGGGTCAAGGTCCAAAAGAGGTTGAAAAGAAAACGGAGCAACTGGAAAGAGCGTTCAAGCCAATGCCTTTCCTTTCTAAATTTTGGGAGATACAGCTTAAAATGTTGGAGTCCAGCAAGGAGCTTTCTAACGAACACACGTTTGGTTCCCGTCCTTCGTGGTGGCCTCTAATGAGAAGAGGAGTGGCATTTTGGATTGCTAAAGAAAACAATGCTCAAATATTTTGTATTGGCAATCCATTTGTGTGGTGGGCAACCACACTGTCTCTGCCTGTGTATCTCGGGCTTTTAGGATTTTATTTATTGAGGAGAAGAAGGAAGGTGTACGACTTGTCCAAAGATTCATGGCAGCAGTTTTTGTTCTGCGGTGAAGCTGTCGTGGTAGGATACCTTTTTCACTTCATCACATTCTTCCCCATGGAAAGAACACTGTTCATTCATCACTACCTTCCCGCGCTCTTCTTCAAAATTGTTCTCCTGCCAGTGATGTTAGAACATGTTCATCAAGAAATCTTTAGATACAAAGCACTTCGGCGGATGTTGTACGCGTGTTGTGCCTTCTTGATTATTATTGTCCTGTGGGGATTTCATTTCTACAGCCCTTTCACATACGGTCACGTGGCGCTCTCCTCTGCTGACATCAACCGACGGAAATGGCTTAGTACATGGGACATGCTCTCTCATCCCAACACGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QF89	Protein O-mannosyl-transferase 1 OS=Danio rerio OX=7955 GN=pomt1 PE=1 SV=1
Q8R2R1	Protein O-mannosyl-transferase 1 OS=Mus musculus OX=10090 GN=Pomt1 PE=1 SV=1
Q99PR0	Protein O-mannosyl-transferase 1 OS=Rattus norvegicus OX=10116 GN=Pomt1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001322 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16192 all species →	PMT_4TMC	C-terminal four TMM region of protein-O-mannosyltransferase	Family	Interproscan
PF02366 all species →	PMT	Dolichyl-phosphate-mannose-protein mannosyltransferase	Family	Interproscan
PF02815 all species →	MIR	MIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016093 all species →	Domain	MIR motif	Interproscan
IPR032421 all species →	Domain	Protein O-mannosyl-transferase, C-terminal four TM domain	Interproscan
IPR003342 all species →	Domain	Glycosyl transferase family 39/83	Interproscan
IPR027005 all species →	Family	Glycosyltransferase 39-like	Interproscan
IPR036300 all species →	Homologous_superfamily	Mir domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10050 all species →	DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004169 all species →	Molecular Function	dolichyl-phosphate-mannose-protein mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00728	POMT, pmt; dolichyl-phosphate-mannose-protein mannosyltransferase	EC:2.4.1.109	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.