Detailed information of evm.model.Ap1.3512 in Astrangia poculata

Genomic Location: Ap1:36271377...36286487
NR annotation: XP_020624576.1, transcription termination factor 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q62187Transcription termination factor 1 OS=Mus musculus OX=10090 GN=Ttf1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001368 (this species only)
Transcription factor familyMYB · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00249
all species →		Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001005
all species →		DomainSANT/Myb domainInterproscan
IPR053078
all species →		FamilyTranscription Termination Factor 1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46760
all species →		TRANSCRIPTION TERMINATION FACTOR 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0006363
all species →		Biological Processtermination of RNA polymerase I transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.3512.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.3512 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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