Gene detail

Detailed information of evm.model.Ap1.3548 in Astrangia poculata

Genomic Location: Ap1:36666011...36692754
NR annotation: XP_020603608.1, Na(+)/H(+) exchanger beta-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3548

atgaaagttaagatgtctttcataaatccagcagcagctttgttgatagtatgtgtgttacttgttcacataagcgccgctgtcggtgacccagcgatcgagagtcacaataattcgtcgaatcacaacggtacttcgggccatggacctccaccggagattacagtggctaagtttgactttgcctatgtatctggacctctgacgatcatcgtgtggattttgatcgcaagtcttgcaaaactgggatttcatttatctcacaagctatcttcagttatacctgaatcatgcttggtaatagtccttggaattgtaataggagcaataatggaaggtatgggtattagcgacatagctccagccttctcatcccgcacgttctttttgttcatgttgccaccaattgtacttgaggctggttattttcttcaggacagagcattttttgacaacataggaacaatattattatatgcagttgtgggaacaatttttaatacatttacagtaggtctgtccctgtttggagtgtcagctaaaatgggaactgacttgaaattgatgcatacattgacatttgcttcactcattgctgctgtagatccagtcgctgtgctggctgtgtttgaagagattcatgttaatgttatgctctatatcctggtgtttggtgaatcactgttgaatgatgctgtaactgtagtattgtatcacctctttgaaggcttagcaggttttgaggaagtcacttataaggaaatccttacaggttttgcgtcattctttgtggtcagcattggtggcacactgcttggattgctgtggggtttagccacagcatttgttacaaagtacactgaccatgtcagagttattgagcccatctttgtgtttgttatgagttaccttgcatacctgacagcagaattgttccacttgtctggaatcatgagtattgtaacctgtgctatcatcatgaagccctatgtggagctaaacatttcaagaaaatctcacacaacaatcaagtattttctcaagatgatgagctccagcagtgaaactctgatctttatgtttcttggagtgcgagtggttagctggcctcacgtatggaacacacagtttgtgtttgttacgctgatatttatactggtctatcggttcttaggtgtggttatcctgacgttccttgccaacagatttggtcggctgaacaaactcagtgctgtggaccagtttattatgagttatggtggaatcagaggtgctgtatcgttttcactggccatccttcttgtcgaagatcattttcctatgaagaacatgtttgttacgaccacaattgttatcgtcctattcacggttttctttcagggaatgaccatcaaacctcttgtacgaattcttcatgtgaagttgagagggaaagaacagcttaacatgtatgcggagcttaatgaaaagtttttagatcaccttgtggctggaattgaagaagttagtggccaccgaggtcatggatattattgggaaatgatagaacatttccacacgcattatctcagaagatggctaatacgtgacagttaccagttcgtccaggatgaagatattttgctggcttatagaagactggcttataaagatgcgctgactcggttagaaaaagaaggtagtggagcaatgctgtttccttcagggcttcctgagcttttggctcgtagtgcatttgaggcttctgcaatcacagctgctgagtcaagtgaagaagaagacgaaaacaaaccaatgttgagagcgggtgacgaatgtcgtgttccagacgctattcaagttgactggagagcgtcaggagaacccagcggtggagaacttgaaatttatgacacctcaagtcacagcttaaacagtcttatagaaagaaacagaaaatcatttagacataggaaaatgtatagaaataacattctcgacgacgatgaagaactcttcagagagagaggatacctttttcccatgaaaccaagagaaacagcgtatcaaaatcagattatggtaaattctaaacctgtccaccatcatcacaaacacaagccaaaacacaaaaaacgacataaacaccgcaagcgacacgaggagccgcccaagaaaaaactttctgctatatttgaagaggaagatcagaatggaaggacttcgccaacaatagaggatccagttccaacaatagaagagacagtggggaaaattccaagtagtgaagacgatgaagatggaataacgttcgaggcgaaacccagggggagactgggccgatatgcatcctttgaaacccaaccaagcaaatactctgctcccgacgagcccgccgctgaggacaccgaagctgataaggaaaaagaagaaagtaagccaacagaagaatcgccaacaaagccagataacataccattagattcgtttgttgttgatatagaaggcgagaaaaaggaaaacgaaaatgcagagagcgttatgtaa

Transcript

evm.model.Ap1.3548

GAAGGGATTCACTCTTTGTGTAAGCTGTTTAGGAAAACAAAGTCCGTCTTGACAAGGAAAGGAATGAAAGTTAAGATGTCTTTCATAAATCCAGCAGCAGCTTTGTTGATAGTATGTGTGTTACTTGTTCACATAAGCGCCGCTGTCGGTGACCCAGCGATCGAGAGTCACAATAATTCGTCGAATCACAACGGTACTTCGGGCCATGGACCTCCACCGGAGATTACAGTGGCTAAGTTTGACTTTGCCTATGTATCTGGACCTCTGACGATCATCGTGTGGATTTTGATCGCAAGTCTTGCAAAACTGGGATTTCATTTATCTCACAAGCTATCTTCAGTTATACCTGAATCATGCTTGGTAATAGTCCTTGGAATTGTAATAGGAGCAATAATGGAAGGTATGGGTATTAGCGACATAGCTCCAGCCTTCTCATCCCGCACGTTCTTTTTGTTCATGTTGCCACCAATTGTACTTGAGGCTGGTTATTTTCTTCAGGACAGAGCATTTTTTGACAACATAGGAACAATATTATTATATGCAGTTGTGGGAACAATTTTTAATACATTTACAGTAGGTCTGTCCCTGTTTGGAGTGTCAGCTAAAATGGGAACTGACTTGAAATTGATGCATACATTGACATTTGCTTCACTCATTGCTGCTGTAGATCCAGTCGCTGTGCTGGCTGTGTTTGAAGAGATTCATGTTAATGTTATGCTCTATATCCTGGTGTTTGGTGAATCACTGTTGAATGATGCTGTAACTGTAGTATTGTATCACCTCTTTGAAGGCTTAGCAGGTTTTGAGGAAGTCACTTATAAGGAAATCCTTACAGGTTTTGCGTCATTCTTTGTGGTCAGCATTGGTGGCACACTGCTTGGATTGCTGTGGGGTTTAGCCACAGCATTTGTTACAAAGTACACTGACCATGTCAGAGTTATTGAGCCCATCTTTGTGTTTGTTATGAGTTACCTTGCATACCTGACAGCAGAATTGTTCCACTTGTCTGGAATCATGAGTATTGTAACCTGTGCTATCATCATGAAGCCCTATGTGGAGCTAAACATTTCAAGAAAATCTCACACAACAATCAAGTATTTTCTCAAGATGATGAGCTCCAGCAGTGAAACTCTGATCTTTATGTTTCTTGGAGTGCGAGTGGTTAGCTGGCCTCACGTATGGAACACACAGTTTGTGTTTGTTACGCTGATATTTATACTGGTCTATCGGTTCTTAGGTGTGGTTATCCTGACGTTCCTTGCCAACAGATTTGGTCGGCTGAACAAACTCAGTGCTGTGGACCAGTTTATTATGAGTTATGGTGGAATCAGAGGTGCTGTATCGTTTTCACTGGCCATCCTTCTTGTCGAAGATCATTTTCCTATGAAGAACATGTTTGTTACGACCACAATTGTTATCGTCCTATTCACGGTTTTCTTTCAGGGAATGACCATCAAACCTCTTGTACGAATTCTTCATGTGAAGTTGAGAGGGAAAGAACAGCTTAACATGTATGCGGAGCTTAATGAAAAGTTTTTAGATCACCTTGTGGCTGGAATTGAAGAAGTTAGTGGCCACCGAGGTCATGGATATTATTGGGAAATGATAGAACATTTCCACACGCATTATCTCAGAAGATGGCTAATACGTGACAGTTACCAGTTCGTCCAGGATGAAGATATTTTGCTGGCTTATAGAAGACTGGCTTATAAAGATGCGCTGACTCGGTTAGAAAAAGAAGGTAGTGGAGCAATGCTGTTTCCTTCAGGGCTTCCTGAGCTTTTGGCTCGTAGTGCATTTGAGGCTTCTGCAATCACAGCTGCTGAGTCAAGTGAAGAAGAAGACGAAAACAAACCAATGTTGAGAGCGGGTGACGAATGTCGTGTTCCAGACGCTATTCAAGTTGACTGGAGAGCGTCAGGAGAACCCAGCGGTGGAGAACTTGAAATTTATGACACCTCAAGTCACAGCTTAAACAGTCTTATAGAAAGAAACAGAAAATCATTTAGACATAGGAAAATGTATAGAAATAACATTCTCGACGACGATGAAGAACTCTTCAGAGAGAGAGGATACCTTTTTCCCATGAAACCAAGAGAAACAGCGTATCAAAATCAGATTATGGTAAATTCTAAACCTGTCCACCATCATCACAAACACAAGCCAAAACACAAAAAACGACATAAACACCGCAAGCGACACGAGGAGCCGCCCAAGAAAAAACTTTCTGCTATATTTGAAGAGGAAGATCAGAATGGAAGGACTTCGCCAACAATAGAGGATCCAGTTCCAACAATAGAAGAGACAGTGGGGAAAATTCCAAGTAGTGAAGACGATGAAGATGGAATAACGTTCGAGGCGAAACCCAGGGGGAGACTGGGCCGATATGCATCCTTTGAAACCCAACCAAGCAAATACTCTGCTCCCGACGAGCCCGCCGCTGAGGACACCGAAGCTGATAAGGAAAAAGAAGAAAGTAAGCCAACAGAAGAATCGCCAACAAAGCCAGATAACATACCATTAGATTCGTTTGTTGTTGATATAGAAGGCGAGAAAAAGGAAAACGAAAATGCAGAGAGCGTTATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26431	Sodium/hydrogen exchanger 1 OS=Rattus norvegicus OX=10116 GN=Slc9a1 PE=1 SV=2
Q61165	Sodium/hydrogen exchanger 1 OS=Mus musculus OX=10090 GN=Slc9a1 PE=1 SV=1
P48761	Sodium/hydrogen exchanger 1 OS=Cricetulus griseus OX=10029 GN=SLC9A1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003187 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00999 all species →	Na_H_Exchanger	Sodium/hydrogen exchanger family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004709 all species →	Family	Na+/H+ exchanger	Interproscan
IPR006153 all species →	Domain	Cation/H+ exchanger	Interproscan
IPR018422 all species →	Family	Cation/H+ exchanger, CPA1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10110 all species →	SODIUM/HYDROGEN EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0006885 all species →	Biological Process	regulation of pH	Interproscan
GO:0015385 all species →	Molecular Function	sodium:proton antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015386 all species →	Molecular Function	potassium:proton antiporter activity	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098719 all species →	Biological Process	sodium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.3548.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.