Gene detail

Detailed information of evm.model.Ap1.3579 in Astrangia poculata

Genomic Location: Ap1:37016855...37040770
NR annotation: XP_020602299.1, low-density lipoprotein receptor-related protein 2-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3579

atggcttcgagtaatccaaataatgtttacatcgcgaatttcatctcagaaaacttctccagcagctgcaacgatttacagaagttcatactgtttgcggttgactattatcgtcaagcaggaatatatctactttcattggatggttcaaactcaggggccaaacccataccaatagagcttaactacatgtatcggccggttgcacttggtctggacattgtagaaaatagaatttactggacagaccctagcctacacacaatctcgagagcgtttttcaatggatcgtcgccagaagatatcgtttctaaggatgtttatgactcaaggggactggccgttgatcctttggggagaaatatctactggactgatacttacgcaaataaaatagaggtcagcagaatggatggaacaacgaggaagacgctgattcaccaagacctgaataatccaagagatataattcttcatcttgaaaagggattaatgtactggtgtgaagtgggtgccaaccacaagattgaagtcgccaacatggatggagatgatagacgggtactggttagaagaggactgtactaccctaatggtcttacactggataagaaaagtaactggctttattgggtggaccaatattccttagaatactatgacttggaacgtcatacggttacaactttgttgcaccgcagttctttcttgcgatatccatttggtctaacgtcgctggatggtcacttgtattggacggattatgtatttgacgtggtttaccaggcggacaagacagcaaatttaaatccaaaggttcttatcagtggtttgagaagtcctatggatatacacgcatatgatagagatgaaacccttccagatcacccttgttcctcttcttatggcgggtgtactcatctctgtcttctaacaccggatggatataactgctcgtgcccagatcacctgaaatctggtgaagtttgctcaccttccgctgttatattaccattgtcctcaactctagtaaacacattctcgaactccaactaccgaactgagagtatagatgtcatctcacgctctacttccatcctgagctcgtcatctagcgaaatgcttcattcatctagaacgtctacctctcacatgaaaacacctgtttcttcaaagcttccatctgcttccctcataacctctgtccactcttctccggcaccaactacaatccacaaaccaccgacccagactgagcagcacaccaaagttatttcaacatatgtgctgccttcacctgctggtaccaccgcatgtcttcccaatgcgtgtaagaacggagggacgtgtgttataccaggaaattactgcaaatgtgaaacgagattcacgtggcatgactgcagtgtttatgttggttcaagttccgtggaaattgagttggctgcttctaaggagaatcatcagtggaatttgttggattttaagattgcaacggcaactgcctgtacagaattcttttgtaaaactggagaatgtacaaggaagtccaaatctggaagagtaaagcgttcagggggagccacatactttcaaccgtctgatattgtaatatctggagtttcctctggcggttggaaagttgaatttgctgtattatttccatctgtggacggcctggctccccagccaatgagccctgttgaaattattcgcatggtgaatgtgaataaaggaagtattgagaaagctgttggaggcaaaatcaaaaggataaccgctgggcacacagtccgaccaatcaaactcatcaagttatcttttacatcaaaagaaccacatcagccgaaaaaagatgctgtattaacccaagaaaaagtaacatctacaattttgtttgctgttggagttggaggtattgttatcctggtgataataactgtggcatttgttatctaccgaatgaggcgcaagagaatacctgacgaaacaaaaacagccatcatgcgtctaggaaataatgtgacaggcaatacccgtacgaacactgaatttgacaacccagcctttaacgcagactccatatatgattccatctcaagaaccacgggcatttcagtggcagcaagcttggatcaagcgaataacggtgacagaatcgagaatactgagaaaagtcacgcctctcttcagcaacaagacggcaaagaatatcctgggcaaggtcgcagaatcgagggtcctgaaaaacgatacgctgcccttcagcagaagaagaacatccaaggcgaagtggaaaggctggccattcagataccaagattattttctcagtatactttagcgtttcactggggtcctgagatggcaaagtgttgtttatttgcagccctatctttctacctcctcccgctaactcaagaatacccaggattccttatttttgccgaaaatagcaatctctggcaagtgtcgttgaatgataatgttacagttgctgcaacattgaaaattccgcttacaaaatatgtatcaagtcctattgccctggattacaatttcctcgacgaaaaagtctactggacagacgtggggctagaaacaatctcccgagcgttcctgaacggatcctctcaagaaaccatagtatcatctcgactctcttatccgtacggacttgctgtggacccttttggtcggaacgtatactggacggatcgctatgaaaacgctattgaagttgcgtctttggacgggctgtaccgacgagttcttattagagatgatttacaatatgcaagcgatattgtcctggacgctaccagaggatacatgtattggactcacttggtctattcgacgcattatgaaaagccgaaaatagaaagagcagatttggatggcgggaataggagaatagctattgagttaggatgctcaagtgacgcctatcctagcggccttgccctggatgaaacaaagaactggctttactgggttgactcctatcatgataagttggaagtgtacgagttcccgaccaacacaagaagagaaataatccggtctcatggggaagcctttcttagtaatccgccaggactggcacttttcgggaatcatctgttctggactgacagttattggaatggaatctaccgcgcggatcgagaaacaggaaacaatgcagcgaaaatcatgtcaacacaatacaatcctgtgtcaatccaggctcacgacaggaatttaaatgttactccagttacataccagtgtaataacaacaatggcggatgtagtcagctttgcttgctcacgcctcttggaagaaagtgttcctgctcagccgggctaattctaagcgaagatggaaaaacgtgtctcgatccttcgcaatttctgctttttgcagatgccaaaaatagtaggataatgaaagtttccccacaagactctggatcactcacatctttgtccttgtcaagcactttaagccgtccagtttcactagcctatgatttcatagaagacagagtgtactggacagatgtctggaggtatacaatctcccgttcatttctaaatggttcttctcaagaagttattatcgacaaaagattggattacccttatggattagcagtggacgttattggaaaaaatctctactggactgataccaacaggctggagatttctaaactgaacggctcttatcgaaatacccttatatccacggatttgcatcagccaagagacattatactggatgttaataaaggaattatgtactggacaaactggaataccaatcctaaaattgagaaagctgatatgactggaaaaaagcgcgtggtcctcgtcagttcaggattgcatcagccgaacggccttacacttgaccataacaacaactggttaaccatggcgaaggcaaattctactattgaagaagtcacgagcgaacagaacgaagaccatcgagtcggcgttgaaacgaccgatatggacagaagagaaagaatccctaccgaaaagggtgactcacttcgcctggaaaggctttttgaagagcgtaaggctgcaggagctgctctgaggaggcaaatcacaaaggtgagcacttaa

Transcript

evm.model.Ap1.3579

ATGGCTTCGAGTAATCCAAATAATGTTTACATCGCGAATTTCATCTCAGAAAACTTCTCCAGCAGCTGCAACGATTTACAGAAGTTCATACTGTTTGCGGTTGACTATTATCGTCAAGCAGGAATATATCTACTTTCATTGGATGGTTCAAACTCAGGGGCCAAACCCATACCAATAGAGCTTAACTACATGTATCGGCCGGTTGCACTTGGTCTGGACATTGTAGAAAATAGAATTTACTGGACAGACCCTAGCCTACACACAATCTCGAGAGCGTTTTTCAATGGATCGTCGCCAGAAGATATCGTTTCTAAGGATGTTTATGACTCAAGGGGACTGGCCGTTGATCCTTTGGGGAGAAATATCTACTGGACTGATACTTACGCAAATAAAATAGAGGTCAGCAGAATGGATGGAACAACGAGGAAGACGCTGATTCACCAAGACCTGAATAATCCAAGAGATATAATTCTTCATCTTGAAAAGGGATTAATGTACTGGTGTGAAGTGGGTGCCAACCACAAGATTGAAGTCGCCAACATGGATGGAGATGATAGACGGGTACTGGTTAGAAGAGGACTGTACTACCCTAATGGTCTTACACTGGATAAGAAAAGTAACTGGCTTTATTGGGTGGACCAATATTCCTTAGAATACTATGACTTGGAACGTCATACGGTTACAACTTTGTTGCACCGCAGTTCTTTCTTGCGATATCCATTTGGTCTAACGTCGCTGGATGGTCACTTGTATTGGACGGATTATGTATTTGACGTGGTTTACCAGGCGGACAAGACAGCAAATTTAAATCCAAAGGTTCTTATCAGTGGTTTGAGAAGTCCTATGGATATACACGCATATGATAGAGATGAAACCCTTCCAGATCACCCTTGTTCCTCTTCTTATGGCGGGTGTACTCATCTCTGTCTTCTAACACCGGATGGATATAACTGCTCGTGCCCAGATCACCTGAAATCTGGTGAAGTTTGCTCACCTTCCGCTGTTATATTACCATTGTCCTCAACTCTAGTAAACACATTCTCGAACTCCAACTACCGAACTGAGAGTATAGATGTCATCTCACGCTCTACTTCCATCCTGAGCTCGTCATCTAGCGAAATGCTTCATTCATCTAGAACGTCTACCTCTCACATGAAAACACCTGTTTCTTCAAAGCTTCCATCTGCTTCCCTCATAACCTCTGTCCACTCTTCTCCGGCACCAACTACAATCCACAAACCACCGACCCAGACTGAGCAGCACACCAAAGTTATTTCAACATATGTGCTGCCTTCACCTGCTGGTACCACCGCATGTCTTCCCAATGCGTGTAAGAACGGAGGGACGTGTGTTATACCAGGAAATTACTGCAAATGTGAAACGAGATTCACGTGGCATGACTGCAGTGTTTATGTTGGTTCAAGTTCCGTGGAAATTGAGTTGGCTGCTTCTAAGGAGAATCATCAGTGGAATTTGTTGGATTTTAAGATTGCAACGGCAACTGCCTGTACAGAATTCTTTTGTAAAACTGGAGAATGTACAAGGAAGTCCAAATCTGGAAGAGTAAAGCGTTCAGGGGGAGCCACATACTTTCAACCGTCTGATATTGTAATATCTGGAGTTTCCTCTGGCGGTTGGAAAGTTGAATTTGCTGTATTATTTCCATCTGTGGACGGCCTGGCTCCCCAGCCAATGAGCCCTGTTGAAATTATTCGCATGGTGAATGTGAATAAAGGAAGTATTGAGAAAGCTGTTGGAGGCAAAATCAAAAGGATAACCGCTGGGCACACAGTCCGACCAATCAAACTCATCAAGTTATCTTTTACATCAAAAGAACCACATCAGCCGAAAAAAGATGCTGTATTAACCCAAGAAAAAGTAACATCTACAATTTTGTTTGCTGTTGGAGTTGGAGGTATTGTTATCCTGGTGATAATAACTGTGGCATTTGTTATCTACCGAATGAGGCGCAAGAGAATACCTGACGAAACAAAAACAGCCATCATGCGTCTAGGAAATAATGTGACAGGCAATACCCGTACGAACACTGAATTTGACAACCCAGCCTTTAACGCAGACTCCATATATGATTCCATCTCAAGAACCACGGGCATTTCAGTGGCAGCAAGCTTGGATCAAGCGAATAACGGTGACAGAATCGAGAATACTGAGAAAAGTCACGCCTCTCTTCAGCAACAAGACGGCAAAGAATATCCTGGGCAAGGTCGCAGAATCGAGGGTCCTGAAAAACGATACGCTGCCCTTCAGCAGAAGAAGAACATCCAAGGCGAAGTGGAAAGGCTGGCCATTCAGATACCAAGATTATTTTCTCAGTATACTTTAGCGTTTCACTGGGGTCCTGAGATGGCAAAGTGTTGTTTATTTGCAGCCCTATCTTTCTACCTCCTCCCGCTAACTCAAGAATACCCAGGATTCCTTATTTTTGCCGAAAATAGCAATCTCTGGCAAGTGTCGTTGAATGATAATGTTACAGTTGCTGCAACATTGAAAATTCCGCTTACAAAATATGTATCAAGTCCTATTGCCCTGGATTACAATTTCCTCGACGAAAAAGTCTACTGGACAGACGTGGGGCTAGAAACAATCTCCCGAGCGTTCCTGAACGGATCCTCTCAAGAAACCATAGTATCATCTCGACTCTCTTATCCGTACGGACTTGCTGTGGACCCTTTTGGTCGGAACGTATACTGGACGGATCGCTATGAAAACGCTATTGAAGTTGCGTCTTTGGACGGGCTGTACCGACGAGTTCTTATTAGAGATGATTTACAATATGCAAGCGATATTGTCCTGGACGCTACCAGAGGATACATGTATTGGACTCACTTGGTCTATTCGACGCATTATGAAAAGCCGAAAATAGAAAGAGCAGATTTGGATGGCGGGAATAGGAGAATAGCTATTGAGTTAGGATGCTCAAGTGACGCCTATCCTAGCGGCCTTGCCCTGGATGAAACAAAGAACTGGCTTTACTGGGTTGACTCCTATCATGATAAGTTGGAAGTGTACGAGTTCCCGACCAACACAAGAAGAGAAATAATCCGGTCTCATGGGGAAGCCTTTCTTAGTAATCCGCCAGGACTGGCACTTTTCGGGAATCATCTGTTCTGGACTGACAGTTATTGGAATGGAATCTACCGCGCGGATCGAGAAACAGGAAACAATGCAGCGAAAATCATGTCAACACAATACAATCCTGTGTCAATCCAGGCTCACGACAGGAATTTAAATGTTACTCCAGTTACATACCAGTGTAATAACAACAATGGCGGATGTAGTCAGCTTTGCTTGCTCACGCCTCTTGGAAGAAAGTGTTCCTGCTCAGCCGGGCTAATTCTAAGCGAAGATGGAAAAACGTGTCTCGATCCTTCGCAATTTCTGCTTTTTGCAGATGCCAAAAATAGTAGGATAATGAAAGTTTCCCCACAAGACTCTGGATCACTCACATCTTTGTCCTTGTCAAGCACTTTAAGCCGTCCAGTTTCACTAGCCTATGATTTCATAGAAGACAGAGTGTACTGGACAGATGTCTGGAGGTATACAATCTCCCGTTCATTTCTAAATGGTTCTTCTCAAGAAGTTATTATCGACAAAAGATTGGATTACCCTTATGGATTAGCAGTGGACGTTATTGGAAAAAATCTCTACTGGACTGATACCAACAGGCTGGAGATTTCTAAACTGAACGGCTCTTATCGAAATACCCTTATATCCACGGATTTGCATCAGCCAAGAGACATTATACTGGATGTTAATAAAGGAATTATGTACTGGACAAACTGGAATACCAATCCTAAAATTGAGAAAGCTGATATGACTGGAAAAAAGCGCGTGGTCCTCGTCAGTTCAGGATTGCATCAGCCGAACGGCCTTACACTTGACCATAACAACAACTGGTTAACCATGGCGAAGGCAAATTCTACTATTGAAGAAGTCACGAGCGAACAGAACGAAGACCATCGAGTCGGCGTTGAAACGACCGATATGGACAGAAGAGAAAGAATCCCTACCGAAAAGGGTGACTCACTTCGCCTGGAAAGGCTTTTTGAAGAGCGTAAGGCTGCAGGAGCTGCTCTGAGGAGGCAAATCACAAAGGTGAGCACTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QYP1	Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus OX=10116 GN=Lrp4 PE=1 SV=2
Q8VI56	Low-density lipoprotein receptor-related protein 4 OS=Mus musculus OX=10090 GN=Lrp4 PE=1 SV=3
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000278 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap1.3579. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20051	LRP4, MEGF7; low-density lipoprotein receptor-related protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.