Gene detail

Detailed information of evm.model.Ap1.3652 in Astrangia poculata

Genomic Location: Ap1:37780714...37786242
NR annotation: CAH3028822.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58DW5	Large ribosomal subunit protein uL18 OS=Bos taurus OX=9913 GN=RPL5 PE=2 SV=3
P46777	Large ribosomal subunit protein uL18 OS=Homo sapiens OX=9606 GN=RPL5 PE=1 SV=3
P15125	Large ribosomal subunit protein uL18A OS=Xenopus laevis OX=8355 GN=rpl5-a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17144 all species →	Ribosomal_L5e	Ribosomal large subunit proteins 60S L5, and 50S L18	Family	Interproscan
PF14204 all species →	Ribosomal_L18_c	Ribosomal L18 C-terminal region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005485 all species →	Family	Large ribosomal subunit protein uL18 eukaryotic/archaeal	Interproscan
IPR025607 all species →	Domain	Large ribosomal subunit protein uL18, C-terminal, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23410 all species →	RIBOSOMAL PROTEIN L5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0008097 all species →	Molecular Function	5S rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02932	RP-L5e, RPL5; large subunit ribosomal protein L5e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.