Genomic Location: Ap1:37794529...37798768
NR annotation: XP_020620421.1, flavin-containing monooxygenase FMO GS-OX-like 8 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.3654 |
| Transcript |
| evm.model.Ap1.3654 |
| Protein |
| evm.model.Ap1.3654 |
| UniProt accession | Description |
|---|---|
| B8EIZ7 | Trimethylamine monooxygenase OS=Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2) OX=395965 GN=tmm PE=1 SV=1 |
| Q5LT63 | Trimethylamine monooxygenase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=tmm PE=1 SV=1 |
| A3SLM3 | Trimethylamine monooxygenase OS=Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM) OX=89187 GN=tmm PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001356 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00743 all species → | FMO-like | Flavin-binding monooxygenase-like | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020946 all species → | Family | Flavin monooxygenase-like | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR050346 all species → | Family | Flavin-containing Monooxygenases | Interproscan |
| IPR000960 all species → | Family | Flavin monooxygenase FMO | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23023 all species → | DIMETHYLANILINE MONOOXYGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004499 all species → | Molecular Function | N,N-dimethylaniline monooxygenase activity | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
| GO:0050661 all species → | Molecular Function | NADP binding | Interproscan |
evm.model.Ap1.3654.Transcript abundance of evm.model.Ap1.3654 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
