Detailed information of evm.model.Ap1.376 in Astrangia poculata

Genomic Location: Ap1:3399579...3405768
NR annotation: XP_022783525.1, U6 snRNA-associated Sm-like protein LSm6 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P62312U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1
P62313U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1
Q9M1Z3Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002962 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423
all species →		LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163
all species →		DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR016487
all species →		FamilySm-like protein Lsm6/SmFInterproscan
IPR010920
all species →		Homologous_superfamilyLSM domain superfamilyInterproscan
IPR047575
all species →		DomainSm domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11021
all species →		SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-FInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005688
all species →		Cellular ComponentU6 snRNPInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0005732
all species →		Cellular Componentsno(s)RNA-containing ribonucleoprotein complexInterproscan
GO:0030490
all species →		Biological Processmaturation of SSU-rRNAInterproscan
GO:0046540
all species →		Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12625LSM6; U6 snRNA-associated Sm-like protein LSm6-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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