Genomic Location: Ap1:39092312...39100653
NR annotation: XP_020627302.1, sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.3770 |
| Transcript |
| evm.model.Ap1.3770 |
| Protein |
| evm.model.Ap1.3770 |
| UniProt accession | Description |
|---|---|
| Q96PZ7 | CUB and sushi domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CSMD1 PE=1 SV=3 |
| P0C6B8 | Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1 |
| Q7Z408 | CUB and sushi domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CSMD2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004370 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00084 all species → | Sushi | Sushi repeat (SCR repeat) | Domain | Interproscan |
| PF01759 all species → | NTR | UNC-6/NTR/C345C module | Domain | Interproscan |
| PF00014 all species → | Kunitz_BPTI | Kunitz/Bovine pancreatic trypsin inhibitor domain | Domain | Interproscan |
| PF07648 all species → | Kazal_2 | Kazal-type serine protease inhibitor domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002350 all species → | Domain | Kazal domain | Interproscan |
| IPR000436 all species → | Domain | Sushi/SCR/CCP domain | Interproscan |
| IPR008993 all species → | Homologous_superfamily | Tissue inhibitor of metalloproteinases-like, OB-fold | Interproscan |
| IPR001134 all species → | Domain | Netrin domain | Interproscan |
| IPR035976 all species → | Homologous_superfamily | Sushi/SCR/CCP superfamily | Interproscan |
| IPR036880 all species → | Homologous_superfamily | Pancreatic trypsin inhibitor Kunitz domain superfamily | Interproscan |
| IPR002223 all species → | Domain | Pancreatic trypsin inhibitor Kunitz domain | Interproscan |
| IPR018933 all species → | Domain | Netrin module, non-TIMP type | Interproscan |
| IPR020901 all species → | Conserved_site | Proteinase inhibitor I2, Kunitz, conserved site | Interproscan |
| IPR051277 all species → | Family | SEZ6/CSMD/C4BPB Neuronal & Immune Regulators | Interproscan |
| IPR036058 all species → | Homologous_superfamily | Kazal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45656 all species → | PROTEIN CBR-CLEC-78 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004867 all species → | Molecular Function | serine-type endopeptidase inhibitor activity | Interproscan |
evm.model.Ap1.3770.Transcript abundance of evm.model.Ap1.3770 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
