Detailed information of evm.model.Ap1.3833 in Astrangia poculata

Genomic Location: Ap1:39654033...39672733
NR annotation: XP_020601420.1, E3 ubiquitin-protein ligase UBR4-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5T4S7E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens OX=9606 GN=UBR4 PE=1 SV=1
Q2TL32E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus OX=10116 GN=Ubr4 PE=1 SV=2
A2AN08E3 ubiquitin-protein ligase UBR4 OS=Mus musculus OX=10090 GN=Ubr4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001776 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19423
all species →		E3_UBR4_NE3 ubiquitin-protein ligase UBR4 N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045189
all species →		FamilyE3 ubiquitin ligase UBR4-likeInterproscan
IPR045841
all species →		DomainE3 ubiquitin-protein ligase UBR4, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21725
all species →		E3 UBIQUITIN-PROTEIN LIGASE UBR4Interproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap1.3833. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.3833.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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