Gene detail

Detailed information of evm.model.Ap1.3871 in Astrangia poculata

Genomic Location: Ap1:40061897...40079924
NR annotation: XP_020601416.1, histone-lysine N-methyltransferase EHMT2-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3871

atggttatttctttcagggtgaacaagccaatggattgccatggcaaccatcgctaccatccttatgcccctccagcagatgctcgtcatgaaaggtatcttggtagggaatggcataggcgagatcacgatcctacctttcgacctgatgggcacaggggaggaaggaacagcaggtacccaagtggccgtaggggaacaggaaatatgactcgttcaatagacagagcagacgtgtaccatagtcatccaccccacaggccagtgaggtctgctgaaggacacttagatccaagatatgatgggccaccacgaagaccttctcctccgtggtaccaaggtagatcaatgcattatggcccaccacgcccaccaaccaactattactatgaaaggaacaccagggtacattatagagaagctggatatggccccccacccaggttgcaccccaagagtatgagaccagccagtgcacatcccacaggctcatcatttccaaatgcaaaatcattaccatcgaccacaccaacaggaagtccgagcttcagcaagaactcaacaacaaagatgttagactctgcatgttcatctaaacagacaaatactggtctagtatacagacatcaaaacttgacaaattgtagtgatcttccatcagtggacaaacaaacatcttctgatgtcaagaatccatccattgtcaaggttgcgccattcagtcatcagccgtcacctaactgcgctaaatcctcagtaggcacaagctcatcttctataacaccaaacaattcaactatcgaaacaaatgttcaggtcaaacctgaaaatcaaatggtgttgcatttgcaaagtaaaataacagaaaccactgcttctgaaggaagcactgaaggagagacttgtcttgctccagaaggtggcttaatgacagtttttgcacccacagcagatggtcagatgcgacctatttgtaggacaatctgtagttgccaactacgaaaacgagctgagaaatatattgacaaagggaaaacaaaggatgactctattgttatagactctgatgaagaagatgacaaaaagaatgttgtggctgtcgacaccattaataaacaaggtgttaaaacatttccagaaagctgtagtcctgttaaagataaaccaagtgagctgcatgaatcaagttccctggattcaccaaggaaaagagcaaaaatgagtacagaaagtgctttggtagacagttcctctttagaagagcagtcatcacccattgcagctacagaagcatcaagtcctttgctagaatctgtggcagacacagtttccagggtggtggatggattacggcagagtcttggtgaagcatggggcagtagtacatcgtcagactcgtcatcagtagctagtgctaatatcgcagatgaaactacagttctaggagatccacaaatccttcgtggaatattgaatatatgcaaagaaacagtcaaaccacataagaagccaaagacatctcccaggaatttgtatactgcggcaaaagactgcaatatccaaaaagttctttctcttctggttgagggatgtgatccaaaccagcaactgttgaaagcgaaaggaaagacagccatgcatgcagctgctgcaggaggctatgttgatattatggcctgcctgagactggcgggatgcgacataaacctcgtggattatgaaaatagaacacctttgttcgatgcaataagtaaccacaaagtcaaagctgtggaatacctaattgattgtggagctgtccttggagtcaaggataccaaaggtatgacgtgtttccatctggccactcgtcaggggcacacagatctgattaagttgttgcttaaaacaggaaagtttgatatcaacgaaaaggacgatggaggctggaccccaatcatgtgggcagctgaggacaaacagtttgacgctactcaactgttgattgaacaaggagctaatgtccacattagagacgaagagctgaatgttccccttcactgggcggcactttctggaaatcttgaagtgtgcaaactcctcttaacggagaatacagacatcaacagtctaaacgtacatatggagacacctctacatatcgctgcaagggaagatcattacgaatgtgtccaattgtttttgggtcggggagctgacattcatatcaggaacaaagacggtcacacacccgaagaggtcgctgaaaccgactcaaaaggacaaattttgttgcaagcaaaacgtgacttggaatcatgtcaggaatctatcagaccacgcatccttcatagcgatatttcccgtggacaggaaaacgtttcaatatcttgcataaacgaggttgacgatgaaccatacccagaatttacattcgtcaaagaatgctgcgaaatttataacgggacgataaactggagtatttcaaaattcgagggttgtgactgtcagagtgactgccgtagtgggagagcttgtagatgctctgaaagcagtgaaagacaaagaatttggtacaacgaggagggtcttttaaaaggtgatatgcagaagtatgaccggcccttactattcgaatgtaatcgaatgtgccagtgctggcaatactgccgcaacagagtggttcagcgtggaatgcaatatccgttacaactctacagaacctacaggaaaggttggggtgtacgaagtcttgctgaaatcccacaaggaagttttgtttgtgaatacacgggtgagttaatatctgacatggaagcagatgctcgagatgacgactcttacctgtttgatctggactgcaaggaaagtgctcatgagttgtactgcattgatgccaagaattacggaaacattagcagatttatcaatcactcctgtgaaccaaatgtcttccccatacgcgtattcatccatcatagagacattagatttccaagaattgctttcttcgctacgaaggacattaaagtacacgacgagatttgttttaattacggagacagattctggtcagtaaaaaagaaggagttttactgtgaatgtgacacgccgagctgcaagtatcgagatcctcgcagttaa

Transcript

evm.model.Ap1.3871

ATGGTTATTTCTTTCAGGGTGAACAAGCCAATGGATTGCCATGGCAACCATCGCTACCATCCTTATGCCCCTCCAGCAGATGCTCGTCATGAAAGGTATCTTGGTAGGGAATGGCATAGGCGAGATCACGATCCTACCTTTCGACCTGATGGGCACAGGGGAGGAAGGAACAGCAGGTACCCAAGTGGCCGTAGGGGAACAGGAAATATGACTCGTTCAATAGACAGAGCAGACGTGTACCATAGTCATCCACCCCACAGGCCAGTGAGGTCTGCTGAAGGACACTTAGATCCAAGATATGATGGGCCACCACGAAGACCTTCTCCTCCGTGGTACCAAGGTAGATCAATGCATTATGGCCCACCACGCCCACCAACCAACTATTACTATGAAAGGAACACCAGGGTACATTATAGAGAAGCTGGATATGGCCCCCCACCCAGGTTGCACCCCAAGAGTATGAGACCAGCCAGTGCACATCCCACAGGCTCATCATTTCCAAATGCAAAATCATTACCATCGACCACACCAACAGGAAGTCCGAGCTTCAGCAAGAACTCAACAACAAAGATGTTAGACTCTGCATGTTCATCTAAACAGACAAATACTGGTCTAGTATACAGACATCAAAACTTGACAAATTGTAGTGATCTTCCATCAGTGGACAAACAAACATCTTCTGATGTCAAGAATCCATCCATTGTCAAGGTTGCGCCATTCAGTCATCAGCCGTCACCTAACTGCGCTAAATCCTCAGTAGGCACAAGCTCATCTTCTATAACACCAAACAATTCAACTATCGAAACAAATGTTCAGGTCAAACCTGAAAATCAAATGGTGTTGCATTTGCAAAGTAAAATAACAGAAACCACTGCTTCTGAAGGAAGCACTGAAGGAGAGACTTGTCTTGCTCCAGAAGGTGGCTTAATGACAGTTTTTGCACCCACAGCAGATGGTCAGATGCGACCTATTTGTAGGACAATCTGTAGTTGCCAACTACGAAAACGAGCTGAGAAATATATTGACAAAGGGAAAACAAAGGATGACTCTATTGTTATAGACTCTGATGAAGAAGATGACAAAAAGAATGTTGTGGCTGTCGACACCATTAATAAACAAGGTGTTAAAACATTTCCAGAAAGCTGTAGTCCTGTTAAAGATAAACCAAGTGAGCTGCATGAATCAAGTTCCCTGGATTCACCAAGGAAAAGAGCAAAAATGAGTACAGAAAGTGCTTTGGTAGACAGTTCCTCTTTAGAAGAGCAGTCATCACCCATTGCAGCTACAGAAGCATCAAGTCCTTTGCTAGAATCTGTGGCAGACACAGTTTCCAGGGTGGTGGATGGATTACGGCAGAGTCTTGGTGAAGCATGGGGCAGTAGTACATCGTCAGACTCGTCATCAGTAGCTAGTGCTAATATCGCAGATGAAACTACAGTTCTAGGAGATCCACAAATCCTTCGTGGAATATTGAATATATGCAAAGAAACAGTCAAACCACATAAGAAGCCAAAGACATCTCCCAGGAATTTGTATACTGCGGCAAAAGACTGCAATATCCAAAAAGTTCTTTCTCTTCTGGTTGAGGGATGTGATCCAAACCAGCAACTGTTGAAAGCGAAAGGAAAGACAGCCATGCATGCAGCTGCTGCAGGAGGCTATGTTGATATTATGGCCTGCCTGAGACTGGCGGGATGCGACATAAACCTCGTGGATTATGAAAATAGAACACCTTTGTTCGATGCAATAAGTAACCACAAAGTCAAAGCTGTGGAATACCTAATTGATTGTGGAGCTGTCCTTGGAGTCAAGGATACCAAAGGTATGACGTGTTTCCATCTGGCCACTCGTCAGGGGCACACAGATCTGATTAAGTTGTTGCTTAAAACAGGAAAGTTTGATATCAACGAAAAGGACGATGGAGGCTGGACCCCAATCATGTGGGCAGCTGAGGACAAACAGTTTGACGCTACTCAACTGTTGATTGAACAAGGAGCTAATGTCCACATTAGAGACGAAGAGCTGAATGTTCCCCTTCACTGGGCGGCACTTTCTGGAAATCTTGAAGTGTGCAAACTCCTCTTAACGGAGAATACAGACATCAACAGTCTAAACGTACATATGGAGACACCTCTACATATCGCTGCAAGGGAAGATCATTACGAATGTGTCCAATTGTTTTTGGGTCGGGGAGCTGACATTCATATCAGGAACAAAGACGGTCACACACCCGAAGAGGTCGCTGAAACCGACTCAAAAGGACAAATTTTGTTGCAAGCAAAACGTGACTTGGAATCATGTCAGGAATCTATCAGACCACGCATCCTTCATAGCGATATTTCCCGTGGACAGGAAAACGTTTCAATATCTTGCATAAACGAGGTTGACGATGAACCATACCCAGAATTTACATTCGTCAAAGAATGCTGCGAAATTTATAACGGGACGATAAACTGGAGTATTTCAAAATTCGAGGGTTGTGACTGTCAGAGTGACTGCCGTAGTGGGAGAGCTTGTAGATGCTCTGAAAGCAGTGAAAGACAAAGAATTTGGTACAACGAGGAGGGTCTTTTAAAAGGTGATATGCAGAAGTATGACCGGCCCTTACTATTCGAATGTAATCGAATGTGCCAGTGCTGGCAATACTGCCGCAACAGAGTGGTTCAGCGTGGAATGCAATATCCGTTACAACTCTACAGAACCTACAGGAAAGGTTGGGGTGTACGAAGTCTTGCTGAAATCCCACAAGGAAGTTTTGTTTGTGAATACACGGGTGAGTTAATATCTGACATGGAAGCAGATGCTCGAGATGACGACTCTTACCTGTTTGATCTGGACTGCAAGGAAAGTGCTCATGAGTTGTACTGCATTGATGCCAAGAATTACGGAAACATTAGCAGATTTATCAATCACTCCTGTGAACCAAATGTCTTCCCCATACGCGTATTCATCCATCATAGAGACATTAGATTTCCAAGAATTGCTTTCTTCGCTACGAAGGACATTAAAGTACACGACGAGATTTGTTTTAATTACGGAGACAGATTCTGGTCAGTAAAAAAGAAGGAGTTTTACTGTGAATGTGACACGCCGAGCTGCAAGTATCGAGATCCTCGCAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z148	Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus OX=10090 GN=Ehmt2 PE=1 SV=2
Q96KQ7	Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens OX=9606 GN=EHMT2 PE=1 SV=3
Q9H9B1	Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens OX=9606 GN=EHMT1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001185 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan
PF05033 all species →	Pre-SET	Pre-SET motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR043550 all species →	Family	Histone-lysine N-methyltransferase EHMT1/EHMT2	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR007728 all species →	Domain	Pre-SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46307 all species →	G9A, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0002039 all species →	Molecular Function	p53 binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006306 all species →	Biological Process	obsolete DNA methylation	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018027 all species →	Biological Process	peptidyl-lysine dimethylation	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046974 all species →	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051570 all species →	Biological Process	obsolete regulation of histone H3-K9 methylation	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11420	EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT	EC:2.1.1.355	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.