Gene detail

Detailed information of evm.model.Ap1.387_evm.model.Ap1.380.1.5f16891a in Astrangia poculata

Genomic Location: Ap1:3459488...3557468
NR annotation: XP_027054228.1, nucleolar protein 6-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.387_evm.model.Ap1.380.1.5f16891a

atgaatggtgaggtgttgaggccaatccttaggcttaagcctaaaggtaaggctgggaaacagtttttcataagattgcatccctgcttatcagaaggcacattcaaacctcagaggttttctccaaacaagagtaatgtcagacagaattggttcaaaggagaggagggcgtggcagatgatggggcagacacagggataccaacacctcattacaatgcgtcagtgttgtcagacatgttcctggaacagcatcttcaccatctgtacaagtgtatcaccgatttcccaggaatgaaagatgctgtggctcttattaaagtttggctgcatcagcgggaacttgaccagggtcaaggtcgttgcagtggatttttggtgtccatgttcatctctcatttgctgtcagttaaaaagatcaacaagcacatgagctcgtaccagattcttagagttttcctgcagttccttggatcaaccgattggacaaaagaaggaataacaatgactagagaagaaagcaaagatagtaatgtgccatccaaggcagatttccatgcaggatttgatgtggtgtttgtggacccctctggccaccttaacttgtgtgctgggatgactgtggcacaatacaggagattgcagcatgaagccaggttatctctggaatttttggacagtagttttatggatggctttgaaatgctcttcatgaaacctgttccatttacacagacatttgatcaatttttacaaattccaaatattagtgctttagaagtagtctgcgagaaaaaagacctgctcaaccaccttatagatcatcctggagactggaccccagttgttactgattggctgcttcaccttgtcagtagaggtctggggcagagagtagagatgctgtgctttaaaccacaagccccgtgtcagtggcctgtgaacaaaacgccgccctccagaagtcagagcagtgtaacactgggcttgctgttgaattctgataatgcagatgctgtgcttgacacaggacccccagcagacagtaccgaggcggcgtccttccgcgcgttttggggtgagaaatcagaattacgccgatttaaagatggctctattctcgaggctgtggtttggccttgtaacagcatagcggagaaaagaaccatttgtgaaagaattattaaacatcttgttcaaagacatggtggtgttgacccgacatcgctttcctatgttgcaaatcagctggactgtgtactgcaggctcatgccgcatcacgtgacagtggaacaggtgatgaggaagctcagcaagtgatccaggtgtacaatgctctgtgtaaacagatccgtgcgctggacttgccgctcaatgtcaactcgcttcagggaattagcccagttttcagaggaacagaggtttttccgccaagtccttgcttcaagaatagtaaagtaaagccgcaaattaccaacgaaaagttagcagacaacgtgctccttccttcggaaataaaaaacacaagttggtgtcctgcaatggaagttgttttgcagttcgagacaagtggtaaatggcctgacgagctaaccgccattcagcacattaaagcggcatttcacatcagacttgctaagttgctgaaaagcgagtgttcattggtaacggctgcttcatcccaacatgtagatgtactgaaggatgggcttgtgtttagaatcaagattatgcattaccgagaaatggtgttacttcaaaagaatgaaatcactcaagatcttaaaacagattgcgagaggaaagctaaagaactagaacgggaaataacacatctaccactcttaacaagcacgcttcacggcattcaacagcagttcagtggatttagcggaacagtccgtttgtccaaacgctgggtgtccgctcaactgttgtctgatcacgtgactgaagagtgtattgagttactagtggcttccctctttctctccccagcccccttcactcctcctcggtctcctctcgttggatttctccgatttcttcatcttctttcatcgactgactggcaaacaactcctgtaattctaaactttaacaacgacatttcagcggaggactaccaggaaataacgtccaagttctcaaacaacaggacgcaacttcctgcaatatttatcgctactcctaaagataaattcaattctttgtggaccaaagacaaaccttctaaacagatcgtcaacagactttccttgctggcgagggagtcacactcgatcttggaacgtcaaattgaaatgtgcgcactgcaaccaacagatttcaagcaaattttccgtccgcctttggatcattatgacgtcatcattcatctacacagccgtcttcttccgcgtggaatccagtcccttgatagagggaaacatctgacagaacaagcctccttatcgcgtccctcagttttacttccggtcgtaaactttgaccctgcgcagttgtatctcgacgaacttaaggaagcattttctgacattgcgctgttcttccacgatgtttatggaggtgacttgattggagttgtgtggaagcctcacagttttgtgccagcacagtttaaggtgcaacacgcggagtacaaaaggccagtaaccagtcctcctcaaacgagtgaaaagaccaaacaggtccagagctgggtcatcccgaacatatccgccatcttgtctgactttcaaacaatcggagagggactggtgaagaagatcgaagtgttgaatgcgtaa

Transcript

evm.model.Ap1.387_evm.model.Ap1.380.1.5f16891a

TTGTTTGAGAGTGTCCAGTTCACTCACATGAATGGTGAGGTGTTGAGGCCAATCCTTAGGCTTAAGCCTAAAGGTAAGGCTGGGAAACAGTTTTTCATAAGATTGCATCCCTGCTTATCAGAAGGCACATTCAAACCTCAGAGGTTTTCTCCAAACAAGAGTAATGTCAGACAGAATTGGTTCAAAGGAGAGGAGGGCGTGGCAGATGATGGGGCAGACACAGGGATACCAACACCTCATTACAATGCGTCAGTGTTGTCAGACATGTTCCTGGAACAGCATCTTCACCATCTGTACAAGTGTATCACCGATTTCCCAGGAATGAAAGATGCTGTGGCTCTTATTAAAGTTTGGCTGCATCAGCGGGAACTTGACCAGGGTCAAGGTCGTTGCAGTGGATTTTTGGTGTCCATGTTCATCTCTCATTTGCTGTCAGTTAAAAAGATCAACAAGCACATGAGCTCGTACCAGATTCTTAGAGTTTTCCTGCAGTTCCTTGGATCAACCGATTGGACAAAAGAAGGAATAACAATGACTAGAGAAGAAAGCAAAGATAGTAATGTGCCATCCAAGGCAGATTTCCATGCAGGATTTGATGTGGTGTTTGTGGACCCCTCTGGCCACCTTAACTTGTGTGCTGGGATGACTGTGGCACAATACAGGAGATTGCAGCATGAAGCCAGGTTATCTCTGGAATTTTTGGACAGTAGTTTTATGGATGGCTTTGAAATGCTCTTCATGAAACCTGTTCCATTTACACAGACATTTGATCAATTTTTACAAATTCCAAATATTAGTGCTTTAGAAGTAGTCTGCGAGAAAAAAGACCTGCTCAACCACCTTATAGATCATCCTGGAGACTGGACCCCAGTTGTTACTGATTGGCTGCTTCACCTTGTCAGTAGAGGTCTGGGGCAGAGAGTAGAGATGCTGTGCTTTAAACCACAAGCCCCGTGTCAGTGGCCTGTGAACAAAACGCCGCCCTCCAGAAGTCAGAGCAGTGTAACACTGGGCTTGCTGTTGAATTCTGATAATGCAGATGCTGTGCTTGACACAGGACCCCCAGCAGACAGTACCGAGGCGGCGTCCTTCCGCGCGTTTTGGGGTGAGAAATCAGAATTACGCCGATTTAAAGATGGCTCTATTCTCGAGGCTGTGGTTTGGCCTTGTAACAGCATAGCGGAGAAAAGAACCATTTGTGAAAGAATTATTAAACATCTTGTTCAAAGACATGGTGGTGTTGACCCGACATCGCTTTCCTATGTTGCAAATCAGCTGGACTGTGTACTGCAGGCTCATGCCGCATCACGTGACAGTGGAACAGGTGATGAGGAAGCTCAGCAAGTGATCCAGGTGTACAATGCTCTGTGTAAACAGATCCGTGCGCTGGACTTGCCGCTCAATGTCAACTCGCTTCAGGGAATTAGCCCAGTTTTCAGAGGAACAGAGGTTTTTCCGCCAAGTCCTTGCTTCAAGAATAGTAAAGTAAAGCCGCAAATTACCAACGAAAAGTTAGCAGACAACGTGCTCCTTCCTTCGGAAATAAAAAACACAAGTTGGTGTCCTGCAATGGAAGTTGTTTTGCAGTTCGAGACAAGTGGTAAATGGCCTGACGAGCTAACCGCCATTCAGCACATTAAAGCGGCATTTCACATCAGACTTGCTAAGTTGCTGAAAAGCGAGTGTTCATTGGTAACGGCTGCTTCATCCCAACATGTAGATGTACTGAAGGATGGGCTTGTGTTTAGAATCAAGATTATGCATTACCGAGAAATGGTGTTACTTCAAAAGAATGAAATCACTCAAGATCTTAAAACAGATTGCGAGAGGAAAGCTAAAGAACTAGAACGGGAAATAACACATCTACCACTCTTAACAAGCACGCTTCACGGCATTCAACAGCAGTTCAGTGGATTTAGCGGAACAGTCCGTTTGTCCAAACGCTGGGTGTCCGCTCAACTGTTGTCTGATCACGTGACTGAAGAGTGTATTGAGTTACTAGTGGCTTCCCTCTTTCTCTCCCCAGCCCCCTTCACTCCTCCTCGGTCTCCTCTCGTTGGATTTCTCCGATTTCTTCATCTTCTTTCATCGACTGACTGGCAAACAACTCCTGTAATTCTAAACTTTAACAACGACATTTCAGCGGAGGACTACCAGGAAATAACGTCCAAGTTCTCAAACAACAGGACGCAACTTCCTGCAATATTTATCGCTACTCCTAAAGATAAATTCAATTCTTTGTGGACCAAAGACAAACCTTCTAAACAGATCGTCAACAGACTTTCCTTGCTGGCGAGGGAGTCACACTCGATCTTGGAACGTCAAATTGAAATGTGCGCACTGCAACCAACAGATTTCAAGCAAATTTTCCGTCCGCCTTTGGATCATTATGACGTCATCATTCATCTACACAGCCGTCTTCTTCCGCGTGGAATCCAGTCCCTTGATAGAGGGAAACATCTGACAGAACAAGCCTCCTTATCGCGTCCCTCAGTTTTACTTCCGGTCGTAAACTTTGACCCTGCGCAGTTGTATCTCGACGAACTTAAGGAAGCATTTTCTGACATTGCGCTGTTCTTCCACGATGTTTATGGAGGTGACTTGATTGGAGTTGTGTGGAAGCCTCACAGTTTTGTGCCAGCACAGTTTAAGGTGCAACACGCGGAGTACAAAAGGCCAGTAACCAGTCCTCCTCAAACGAGTGAAAAGACCAAACAGGTCCAGAGCTGGGTCATCCCGAACATATCCGCCATCTTGTCTGACTTTCAAACAATCGGAGAGGGACTGGTGAAGAAGATCGAAGTGTTGAATGCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M7P5	Nucleolar protein 6 OS=Xenopus tropicalis OX=8364 GN=nol6 PE=2 SV=1
Q6NRY2	Nucleolar protein 6 OS=Xenopus laevis OX=8355 GN=nol6 PE=2 SV=2
Q9H6R4	Nucleolar protein 6 OS=Homo sapiens OX=9606 GN=NOL6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003567 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17407 all species →	Nrap_D6	Nrap protein domain 6	Domain	Interproscan
PF17404 all species →	Nrap_D3	Nrap protein domain 3	Domain	Interproscan
PF17406 all species →	Nrap_D5	Nrap protein PAP/OAS1-like domain 5	Domain	Interproscan
PF17405 all species →	Nrap_D4	Nrap protein nucleotidyltransferase domain 4	Domain	Interproscan
PF03813 all species →	Nrap	Nrap protein domain 1	Domain	Interproscan
PF17403 all species →	Nrap_D2	Nrap protein PAP/OAS-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035371 all species →	Domain	Nrap protein, domain 6	Interproscan
IPR035368 all species →	Domain	Nrap protein, domain 3	Interproscan
IPR005554 all species →	Family	NOL6/Upt22	Interproscan
IPR035370 all species →	Domain	Nrap protein, domain 5	Interproscan
IPR035369 all species →	Domain	Nrap protein, domain 4	Interproscan
IPR035082 all species →	Domain	Nrap protein domain 1	Interproscan
IPR035367 all species →	Domain	Nrap protein, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17972 all species →	NUCLEOLAR RNA-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0006409 all species →	Biological Process	tRNA export from nucleus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0032545 all species →	Cellular Component	CURI complex	Interproscan
GO:0034456 all species →	Cellular Component	UTP-C complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.387_evm.model.Ap1.380.1.5f16891a.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.