Gene detail

Detailed information of evm.model.Ap1.394 in Astrangia poculata

Genomic Location: Ap1:3600740...3644443
NR annotation: XP_027054227.1, 3'-5' RNA helicase YTHDC2-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.394

tatcagatctacactcttcattcgtctatgcaaccatcagaacagagaaagattctctctaccaatatagctgagacaagtgtaacaatagatgatgttgtatttgtgattgacagtggaaaagtgaaagagaaatcttttgatgccttgacgtcagtgtccacactacacccagtgtgggtgtccaagacaagtgcaatacagagaaaaggaagggctggaaggtgctcccctggtgtttgtttccatttatttagccgtgttcgctacgatagtttattggaatatcaaattccagagttactgagaacaccactgcaggaactctgtcttcatacaaagctcctagcatcaccaaacacgtcaatttctgattttctgtccaaagctcctgaagcaccaccctttttggtgctacgaaatgctattgccctgctaaagacaatagatgccttggatcaatgggaagatctgactgaccttggtcgtcaccttgcagacttacctctcagtcctcagctggggaagatgatcttgtattcagttgtactgaaatgtgtggatccaattgttaccatagcttgtgctctggcatacagagatcctttcatcttgccaatgtatccatcagagaagcgtgctgcagctgcagccaggaaaagattcatcttggatccatttagtgatcacttgatctttgttcaagtgtttaggggctggcaacgtgcaagatctgaggggtttgacaaaaacttctgtcgcaggaattatttgtctcaggccacattagaaatgatggcagggatgaggtcacagattcttggtcagttaaaagttgcaggatttattcggcctcgtggtgcaggggatataagagacttgaattcaaactcaaataactgggctgttgtcaaggcagccctctgtgctggaactttccctcaagtagctcgtgtggatagaagtaccaaaaaactcacaacacaaaaagagactaaggttcgatttcacaattcctccattttgtaccagtccccaacccaaggagaatctatgagtggtgcccaggccaaagccatcaccaaactcccatctgattggctgatttatgaagaaatggcaagattgtacacaacagtgactgtcaaatgctgcacactagtgtctcccataacagtagcactcttcactggacccagtctctcctctgagcatgttacccaggacccctctgcaactcgtgacggtgagagataccctggagaaggcctaggacgagagagtgagagcagtgacagtgacacagaggaaacatcaggagagaaaaaggaaaacaatggtgttgtgttcaaagtggatgactggattgctctctcaggaaacaaagaggttgtaaatcacgtgtcatacctacaccataagctacaagcgctgttcatcagaaggattcgttctccttccagaccatggtcccaagttgatgagatggttgtccgtgcagtatcagcagttttaacagctgaggagcaagtcatgaatccttcattgtacccacgccaaagaagaacacgaccaggaattgaaagtggaccccccatgcgatctagggcagaaaggccgcgcccagtagagcagttttctccgtcaagggaacgccctcgagactcttctggatcaagcccgcacattaaaagtgaaataccgtcttcccctcagaatggaaacaaaccatcaagtgacagttggtcaccaagacctgctcagcagtcagagaaattaagtgaagctcgttactttatcatgaagtgcaacaatcaaagaaatttggacatatcaatggccaagggcatctgggcaacaacattggccaatgaaaagaagcttaacagagcctttaaggaaaccaagcatgtcattcttgtcttctctgtgcaaggaagtggccactttcaaggctatgcacagatgacatcacctattggcaaagacaagtctcctgagtttggttcaagctcactcagcggtgttttcaatgttgactggattaagaacgccagtaatccattccagcaagctcatcatcttgtgaacccgtggaatgatcacaagaaagttcagatcagtcgtgacagacaggagttggagcctaaaatcggtgaagagctttgtaagctgtgggacgctgaccaaagcagtctaagcgggcgcaccccctcaatgccaatccctgtttaa

Transcript

evm.model.Ap1.394

GTATCAGATCTACACTCTTCATTCGTCTATGCAACCATCAGAACAGAGAAAGATTCTCTCTACCAATATAGCTGAGACAAGTGTAACAATAGATGATGTTGTATTTGTGATTGACAGTGGAAAAGTGAAAGAGAAATCTTTTGATGCCTTGACGTCAGTGTCCACACTACACCCAGTGTGGGTGTCCAAGACAAGTGCAATACAGAGAAAAGGAAGGGCTGGAAGGTGCTCCCCTGGTGTTTGTTTCCATTTATTTAGCCGTGTTCGCTACGATAGTTTATTGGAATATCAAATTCCAGAGTTACTGAGAACACCACTGCAGGAACTCTGTCTTCATACAAAGCTCCTAGCATCACCAAACACGTCAATTTCTGATTTTCTGTCCAAAGCTCCTGAAGCACCACCCTTTTTGGTGCTACGAAATGCTATTGCCCTGCTAAAGACAATAGATGCCTTGGATCAATGGGAAGATCTGACTGACCTTGGTCGTCACCTTGCAGACTTACCTCTCAGTCCTCAGCTGGGGAAGATGATCTTGTATTCAGTTGTACTGAAATGTGTGGATCCAATTGTTACCATAGCTTGTGCTCTGGCATACAGAGATCCTTTCATCTTGCCAATGTATCCATCAGAGAAGCGTGCTGCAGCTGCAGCCAGGAAAAGATTCATCTTGGATCCATTTAGTGATCACTTGATCTTTGTTCAAGTGTTTAGGGGCTGGCAACGTGCAAGATCTGAGGGGTTTGACAAAAACTTCTGTCGCAGGAATTATTTGTCTCAGGCCACATTAGAAATGATGGCAGGGATGAGGTCACAGATTCTTGGTCAGTTAAAAGTTGCAGGATTTATTCGGCCTCGTGGTGCAGGGGATATAAGAGACTTGAATTCAAACTCAAATAACTGGGCTGTTGTCAAGGCAGCCCTCTGTGCTGGAACTTTCCCTCAAGTAGCTCGTGTGGATAGAAGTACCAAAAAACTCACAACACAAAAAGAGACTAAGGTTCGATTTCACAATTCCTCCATTTTGTACCAGTCCCCAACCCAAGGAGAATCTATGAGTGGTGCCCAGGCCAAAGCCATCACCAAACTCCCATCTGATTGGCTGATTTATGAAGAAATGGCAAGATTGTACACAACAGTGACTGTCAAATGCTGCACACTAGTGTCTCCCATAACAGTAGCACTCTTCACTGGACCCAGTCTCTCCTCTGAGCATGTTACCCAGGACCCCTCTGCAACTCGTGACGGTGAGAGATACCCTGGAGAAGGCCTAGGACGAGAGAGTGAGAGCAGTGACAGTGACACAGAGGAAACATCAGGAGAGAAAAAGGAAAACAATGGTGTTGTGTTCAAAGTGGATGACTGGATTGCTCTCTCAGGAAACAAAGAGGTTGTAAATCACGTGTCATACCTACACCATAAGCTACAAGCGCTGTTCATCAGAAGGATTCGTTCTCCTTCCAGACCATGGTCCCAAGTTGATGAGATGGTTGTCCGTGCAGTATCAGCAGTTTTAACAGCTGAGGAGCAAGTCATGAATCCTTCATTGTACCCACGCCAAAGAAGAACACGACCAGGAATTGAAAGTGGACCCCCCATGCGATCTAGGGCAGAAAGGCCGCGCCCAGTAGAGCAGTTTTCTCCGTCAAGGGAACGCCCTCGAGACTCTTCTGGATCAAGCCCGCACATTAAAAGTGAAATACCGTCTTCCCCTCAGAATGGAAACAAACCATCAAGTGACAGTTGGTCACCAAGACCTGCTCAGCAGTCAGAGAAATTAAGTGAAGCTCGTTACTTTATCATGAAGTGCAACAATCAAAGAAATTTGGACATATCAATGGCCAAGGGCATCTGGGCAACAACATTGGCCAATGAAAAGAAGCTTAACAGAGCCTTTAAGGAAACCAAGCATGTCATTCTTGTCTTCTCTGTGCAAGGAAGTGGCCACTTTCAAGGCTATGCACAGATGACATCACCTATTGGCAAAGACAAGTCTCCTGAGTTTGGTTCAAGCTCACTCAGCGGTGTTTTCAATGTTGACTGGATTAAGAACGCCAGTAATCCATTCCAGCAAGCTCATCATCTTGTGAACCCGTGGAATGATCACAAGAAAGTTCAGATCAGTCGTGACAGACAGGAGTTGGAGCCTAAAATCGGTGAAGAGCTTTGTAAGCTGTGGGACGCTGACCAAAGCAGTCTAAGCGGGCGCACCCCCTCAATGCCAATCCCTGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R746	3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2
Q9H6S0	3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2
B2RR83	3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003208 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF04146 all species →	YTH	YT521-B-like domain	Domain	Interproscan
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007275 all species →	Domain	YTH domain	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.394.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.