Detailed information of evm.model.Ap1.3973 in Astrangia poculata

Genomic Location: Ap1:40536226...40539590
NR annotation: XP_031564035.1, uncharacterized protein LOC116299516 [Actinia tenebrosa]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001264 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410
all species →		COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF06439
all species →		3keto-disac_hyd3-keto-disaccharide hydrolaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000885
all species →		DomainFibrillar collagen, C-terminalInterproscan
IPR036056
all species →		Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR010496
all species →		Domain3-keto-disaccharide hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16146
all species →		INTELECTINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005201
all species →		Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0070492
all species →		Molecular Functionoligosaccharide bindingInterproscan
GO:0016787
all species →		Molecular Functionhydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.3973.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.3973 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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