Detailed information of evm.model.Ap1.3983 in Astrangia poculata

Genomic Location: Ap1:40761062...40766548
NR annotation: XP_020604986.1, rab5 GDP/GTP exchange factor-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UJ41Rab5 GDP/GTP exchange factor OS=Homo sapiens OX=9606 GN=RABGEF1 PE=1 SV=3
O18973Rab5 GDP/GTP exchange factor OS=Bos taurus OX=9913 GN=RABGEF1 PE=1 SV=1
Q9JM13Rab5 GDP/GTP exchange factor OS=Mus musculus OX=10090 GN=Rabgef1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004212 (this species only)
Ubiquitin familyUBD|ZnF|ZnF_A20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01754
all species →		zf-A20A20-like zinc fingerFamilyInterproscan
PF18151
all species →		DUF5601Domain of unknown function (DUF5601)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002653
all species →		DomainZinc finger, A20-typeInterproscan
IPR045046
all species →		FamilyVacuolar protein sorting-associated protein 9-likeInterproscan
IPR041545
all species →		DomainRABX5, catalytic core helical domainInterproscan
IPR037191
all species →		Homologous_superfamilyVPS9 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23101
all species →		RAB GDP/GTP EXCHANGE FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005085
all species →		Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0030139
all species →		Cellular Componentendocytic vesicleInterproscan
GO:0031267
all species →		Molecular Functionsmall GTPase bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.3983.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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