Gene detail

Detailed information of evm.model.Ap1.3990 in Astrangia poculata

Genomic Location: Ap1:40902059...40922018
NR annotation: KAJ7360243.1, hypothetical protein OS493_016872 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3990

atgttttcaaagagaagactaaaaatcggtgttttctttagtgatctttcagataatcctttgctgagatttatcaataaagattgcttcaggaatctcacatcacttatgaaaatcaatctctacaatgataacatcagaggaggatttctcctgccagacagtgtggtgtatgtggatatacaatttaataaactttcactcgacgaccttaaagtgattgtcaaaggaaagagaaagctcacccacttgttaatcgatgggaatcctatcggcccaacacttactgccgacacctttgctagtttggaaagcatgaaaagtttatctatgcgaggctgtaacctagaatatatcgagagtgaagctttggtagcgatgaggaacttggagagcctaaaacttcaaaacaattttctgtcagtgctgcacccagggagcttgcatggaccttctgatagactcaagaatctatacttcgattcgaacaaaatatcgtctatagccgatggaacattccgatcatttagtaacttagaaatgctaactttaataggaaatgagatagaggaactaccacttggagtgtttcagaatttgtcaattctctcacttgacttgtcattcaacaacataaagtccatcgaagatggagcgtttcgtggctgtgaagatttatatcaactgatgattgctaacaataatttatcagcaattcctaatggaaccttcagtgatacaaatctgaacacactgtttctccacaacaatgaaatcaaatcagtcgaacaaaaggcttttcacggtctaagcaacctagactcactgacgttgtttaacaatccattaagctcgcttccttctggaatctttgatgaactcacatctgggacaaaaattaaatgtgccccttcgacatctttttatatgagaattattattgacgatacgaccatcaaaagtcttgaaagtgcagggtttttgtgcaatgactgttttgatgaggcctacaatggagtaggatgctataactgcagcttctgtgggatgggctatcatagtgacggcaaaggttcttgtgcttcttgtccagcaggaggcttttatcaagatgagattggccaaatggagtgcaaattatgcagcgtaggcacctacgtcccggaggacagctatcctggaagaaaagcaacggactgccgtgcatgcccgtacggtaccctttctaatacgaccgctggttatcgtgcgtgtagatgccttgacagcttttaccgccaagaccgttttggcccctgctctaaatgcgcatcttctggaattgtttgccggaaagatacagcgatattagctcctaactattactggaaatggattaatttaacttcaaaagaatcctatagaggatttctggaaaacattaacatttcaagtccggagtacaatcattcctattccaagtttttgggatccttacctacacctcttaaatgtccatatctgggatcctgcaaaggaggcgttgactccgattgtcacgaaggatatagcggcaccttgtgtgcaacttgcactgcagaccacttttttcgatttaatacttgtataaagtgtccaagaatgacagtcgcggttctttcatctgctggagttgtagtactgtttcttacggtattcttgatgattctttggggcgactcgaaacacgcaagtaacaatagaactgtcgcagatgtcatcatgtcgtgcattaagatcgtaattggctttcatcaagttattacagcaattttctcagcactcgtgcgggttcaatggcccataagtttggtcgctatggaaaagtacttgaaacttgtcgaaggaaatattttgcagtttgcccctttgagctgtattgatcctcgatttcgtctggatccttttctggagtttgctctaacaataggcatcaacttcgcagttgttttcatgatcctcttatatcttcttctaaagaaacgctacatcaacagaatggagatttttatgaacgaaaaaatggaaaaaatatcgagcttgaagaggtcgtgctatcgaaacatatttctgtttcttcttttgtcatacccagtgacaagtaagaagattattcacatcctaccactgcccggagtttgtgtaaaaacgtgttttaccaacgatggaagcgattgcatctctcttctgaaggccgactactccatcccatgctttacagctcgacacaacatcttctggcacattgctgctgcgttttcgctgtatcctgtggcattcccactgctgctactgttactcatttacaagtaccgggactcgcaagcgcataaagaaatggcctttggattaagagtgttctttgaaaactataaaaagagatattggttttgggagataggtgagatgtactggaagctgatgctgacctcgatgatccttctctttgaaaccgaaagccgctcccgtatcggattttcagttgccacagccagtgcttttggaattgcctacacaatcttccgaccaataaaagagagattcgaggaccgacttcaaacctatgcactctgggtaatattcttcgacgtttgccttggtgcaatatattcacagcctgacgtcaacgaagatcacagtgaaaacaaatccatctttgttaacgtcctcttcgtgttgctcaacagttcagtcctgcttctcaccgtaggaaagggtttggtctacatgagatatatctggagaaaagttgtttcctcttgtattgtacgatgtttccaacttatttgtcaaagctgccaggctttaaaaaggaaagcttctcgccggaggcaggatttctcttcgaattttacagcagcctttatcgatgaacttgtccaaccactatcagaagacgatttaagggaataa

Transcript

evm.model.Ap1.3990

ATGTTTTCAAAGAGAAGACTAAAAATCGGTGTTTTCTTTAGTGATCTTTCAGATAATCCTTTGCTGAGATTTATCAATAAAGATTGCTTCAGGAATCTCACATCACTTATGAAAATCAATCTCTACAATGATAACATCAGAGGAGGATTTCTCCTGCCAGACAGTGTGGTGTATGTGGATATACAATTTAATAAACTTTCACTCGACGACCTTAAAGTGATTGTCAAAGGAAAGAGAAAGCTCACCCACTTGTTAATCGATGGGAATCCTATCGGCCCAACACTTACTGCCGACACCTTTGCTAGTTTGGAAAGCATGAAAAGTTTATCTATGCGAGGCTGTAACCTAGAATATATCGAGAGTGAAGCTTTGGTAGCGATGAGGAACTTGGAGAGCCTAAAACTTCAAAACAATTTTCTGTCAGTGCTGCACCCAGGGAGCTTGCATGGACCTTCTGATAGACTCAAGAATCTATACTTCGATTCGAACAAAATATCGTCTATAGCCGATGGAACATTCCGATCATTTAGTAACTTAGAAATGCTAACTTTAATAGGAAATGAGATAGAGGAACTACCACTTGGAGTGTTTCAGAATTTGTCAATTCTCTCACTTGACTTGTCATTCAACAACATAAAGTCCATCGAAGATGGAGCGTTTCGTGGCTGTGAAGATTTATATCAACTGATGATTGCTAACAATAATTTATCAGCAATTCCTAATGGAACCTTCAGTGATACAAATCTGAACACACTGTTTCTCCACAACAATGAAATCAAATCAGTCGAACAAAAGGCTTTTCACGGTCTAAGCAACCTAGACTCACTGACGTTGTTTAACAATCCATTAAGCTCGCTTCCTTCTGGAATCTTTGATGAACTCACATCTGGGACAAAAATTAAATGTGCCCCTTCGACATCTTTTTATATGAGAATTATTATTGACGATACGACCATCAAAAGTCTTGAAAGTGCAGGGTTTTTGTGCAATGACTGTTTTGATGAGGCCTACAATGGAGTAGGATGCTATAACTGCAGCTTCTGTGGGATGGGCTATCATAGTGACGGCAAAGGTTCTTGTGCTTCTTGTCCAGCAGGAGGCTTTTATCAAGATGAGATTGGCCAAATGGAGTGCAAATTATGCAGCGTAGGCACCTACGTCCCGGAGGACAGCTATCCTGGAAGAAAAGCAACGGACTGCCGTGCATGCCCGTACGGTACCCTTTCTAATACGACCGCTGGTTATCGTGCGTGTAGATGCCTTGACAGCTTTTACCGCCAAGACCGTTTTGGCCCCTGCTCTAAATGCGCATCTTCTGGAATTGTTTGCCGGAAAGATACAGCGATATTAGCTCCTAACTATTACTGGAAATGGATTAATTTAACTTCAAAAGAATCCTATAGAGGATTTCTGGAAAACATTAACATTTCAAGTCCGGAGTACAATCATTCCTATTCCAAGTTTTTGGGATCCTTACCTACACCTCTTAAATGTCCATATCTGGGATCCTGCAAAGGAGGCGTTGACTCCGATTGTCACGAAGGATATAGCGGCACCTTGTGTGCAACTTGCACTGCAGACCACTTTTTTCGATTTAATACTTGTATAAAGTGTCCAAGAATGACAGTCGCGGTTCTTTCATCTGCTGGAGTTGTAGTACTGTTTCTTACGGTATTCTTGATGATTCTTTGGGGCGACTCGAAACACGCAAGTAACAATAGAACTGTCGCAGATGTCATCATGTCGTGCATTAAGATCGTAATTGGCTTTCATCAAGTTATTACAGCAATTTTCTCAGCACTCGTGCGGGTTCAATGGCCCATAAGTTTGGTCGCTATGGAAAAGTACTTGAAACTTGTCGAAGGAAATATTTTGCAGTTTGCCCCTTTGAGCTGTATTGATCCTCGATTTCGTCTGGATCCTTTTCTGGAGTTTGCTCTAACAATAGGCATCAACTTCGCAGTTGTTTTCATGATCCTCTTATATCTTCTTCTAAAGAAACGCTACATCAACAGAATGGAGATTTTTATGAACGAAAAAATGGAAAAAATATCGAGCTTGAAGAGGTCGTGCTATCGAAACATATTTCTGTTTCTTCTTTTGTCATACCCAGTGACAAGTAAGAAGATTATTCACATCCTACCACTGCCCGGAGTTTGTGTAAAAACGTGTTTTACCAACGATGGAAGCGATTGCATCTCTCTTCTGAAGGCCGACTACTCCATCCCATGCTTTACAGCTCGACACAACATCTTCTGGCACATTGCTGCTGCGTTTTCGCTGTATCCTGTGGCATTCCCACTGCTGCTACTGTTACTCATTTACAAGTACCGGGACTCGCAAGCGCATAAAGAAATGGCCTTTGGATTAAGAGTGTTCTTTGAAAACTATAAAAAGAGATATTGGTTTTGGGAGATAGGTGAGATGTACTGGAAGCTGATGCTGACCTCGATGATCCTTCTCTTTGAAACCGAAAGCCGCTCCCGTATCGGATTTTCAGTTGCCACAGCCAGTGCTTTTGGAATTGCCTACACAATCTTCCGACCAATAAAAGAGAGATTCGAGGACCGACTTCAAACCTATGCACTCTGGGTAATATTCTTCGACGTTTGCCTTGGTGCAATATATTCACAGCCTGACGTCAACGAAGATCACAGTGAAAACAAATCCATCTTTGTTAACGTCCTCTTCGTGTTGCTCAACAGTTCAGTCCTGCTTCTCACCGTAGGAAAGGGTTTGGTCTACATGAGATATATCTGGAGAAAAGTTGTTTCCTCTTGTATTGTACGATGTTTCCAACTTATTTGTCAAAGCTGCCAGGCTTTAAAAAGGAAAGCTTCTCGCCGGAGGCAGGATTTCTCTTCGAATTTTACAGCAGCCTTTATCGATGAACTTGTCCAACCACTATCAGAAGACGATTTAAGGGAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13306 all species →	LRR_5	BspA type Leucine rich repeat region (6 copies)	Repeat	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR026906 all species →	Repeat	BspA-type LRR region	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR050328 all species →	Family	Multifunctional Developmental and Immune Receptor	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24373 all species →	SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.3990.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.