Genomic Location: Ap1:41288860...41306482
NR annotation: XP_020610258.1, serine/threonine-protein phosphatase 1 regulatory subunit 10-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.4020 |
| Transcript |
| evm.model.Ap1.4020 |
| Protein |
| evm.model.Ap1.4020 |
| UniProt accession | Description |
|---|---|
| Q6GLQ4 | Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Xenopus laevis OX=8355 GN=ppp1r10 PE=2 SV=1 |
| Q80W00 | Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Mus musculus OX=10090 GN=Ppp1r10 PE=1 SV=1 |
| Q5TM61 | Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Macaca mulatta OX=9544 GN=PPP1R10 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004482 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08711 all species → | Med26 | TFIIS helical bundle-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017923 all species → | Domain | Transcription factor IIS, N-terminal | Interproscan |
| IPR000571 all species → | Domain | Zinc finger, CCCH-type | Interproscan |
| IPR003617 all species → | Domain | Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type | Interproscan |
| IPR035441 all species → | Homologous_superfamily | TFIIS/LEDGF domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46557 all species → | SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0000785 all species → | Cellular Component | chromatin | Interproscan |
| GO:0008157 all species → | Molecular Function | protein phosphatase 1 binding | Interproscan |
| GO:0072357 all species → | Cellular Component | PTW/PP1 phosphatase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17552 | PPP1R10; protein phosphatase 1 regulatory subunit 10 | - | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Transcript abundance of evm.model.Ap1.4020 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
