Detailed information of evm.model.Ap1.4056 in Astrangia poculata

Genomic Location: Ap1:41693527...41698718
NR annotation: XP_020625070.1, nucleoside diphosphate-linked moiety X motif 19-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5PQ50Acyl-coenzyme A diphosphatase NUDT19 OS=Xenopus laevis OX=8355 GN=nudt19 PE=2 SV=1
Q5ZL13Acyl-coenzyme A diphosphatase NUDT19 OS=Gallus gallus OX=9031 GN=NUDT19 PE=2 SV=1
Q7M0H3Acyl-coenzyme A diphosphatase NUDT19 OS=Mus caroli OX=10089 GN=Nudt19 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004371 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap1.4056. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR000086
all species →		DomainNUDIX hydrolase domainInterproscan
IPR039121
all species →		FamilyAcyl-coenzyme A diphosphatase NUDT19Interproscan
IPR015797
all species →		Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12318
all species →		TESTOSTERONE-REGULATED PROTEIN RP2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0016818
all species →		Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.4056.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.4056 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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