Gene detail

Detailed information of evm.model.Ap1.4146 in Astrangia poculata

Genomic Location: Ap1:42436851...42438051
NR annotation: XP_020620022.1, cytochrome c [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6QLW4	Cytochrome c OS=Pectinaria gouldii OX=260746 PE=3 SV=1
P00021	Cytochrome c OS=Columba livia OX=8932 GN=CYC PE=1 SV=2
P00020	Cytochrome c OS=Anas platyrhynchos OX=8839 GN=CYC PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004990 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00034 all species →	Cytochrom_C	Cytochrome c	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036909 all species →	Homologous_superfamily	Cytochrome c-like domain superfamily	Interproscan
IPR009056 all species →	Domain	Cytochrome c-like domain	Interproscan
IPR002327 all species →	Family	Cytochrome c, class IA/ IB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11961 all species →	CYTOCHROME C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0005758 all species →	Cellular Component	mitochondrial intermembrane space	Interproscan
GO:0006122 all species →	Biological Process	mitochondrial electron transport, ubiquinol to cytochrome c	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan
GO:0043280 all species →	Biological Process	obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08738	CYC; cytochrome c	-	Platinum drug resistance	ko01524	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.