Genomic Location: Ap1:42442121...42444155
NR annotation: CAH3178052.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.4147 |
| Transcript |
| evm.model.Ap1.4147 |
| Protein |
| evm.model.Ap1.4147 |
| UniProt accession | Description |
|---|---|
| Q68FI4 | Actin-related protein 2/3 complex subunit 5-A OS=Xenopus laevis OX=8355 GN=arpc5-a PE=2 SV=1 |
| A1L108 | Actin-related protein 2/3 complex subunit 5-like protein OS=Rattus norvegicus OX=10116 GN=Arpc5l PE=1 SV=2 |
| Q641B9 | Actin-related protein 2/3 complex subunit 5-C OS=Xenopus laevis OX=8355 GN=arpc5-c PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008727 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04699 all species → | P16-Arc | ARP2/3 complex 16 kDa subunit (p16-Arc) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036743 all species → | Homologous_superfamily | Actin-related protein 2/3 complex subunit 5 superfamily | Interproscan |
| IPR006789 all species → | Family | Actin-related protein 2/3 complex subunit 5 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12644 all species → | ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005885 all species → | Cellular Component | Arp2/3 protein complex | Interproscan |
| GO:0015629 all species → | Cellular Component | actin cytoskeleton | Interproscan |
| GO:0030833 all species → | Biological Process | regulation of actin filament polymerization | Interproscan |
| GO:0034314 all species → | Biological Process | Arp2/3 complex-mediated actin nucleation | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05754 | ARPC5; actin related protein 2/3 complex, subunit 5 | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of evm.model.Ap1.4147 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
