Gene detail

Detailed information of evm.model.Ap1.422 in Astrangia poculata

Genomic Location: Ap1:3807579...3824854
NR annotation: XP_020627795.1, DNA mismatch repair protein Msh3-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.422

atgaggaaaataaacctcggaaagctgcggtgctcaacacattcttcctctaatggtcattctccaagtggcgcatccacaaagaatcaatcacagtctacgatttcgagtttcttcgtaagaaaaccgtcttcaaaggcgaagggaactgacaacagtgaaagcaaatcagcagtgaatggagatactagtggtgcaaaagctgctaagagaactgccagcaaattatctcagtatgagaacaatggtgactgcaatgtgcagaattctaaaaagcaaagacttcatctggatcagtcagtacaggatgacaatcatttgactttgacaaacaaggaaacattaagttcttccacaatggttaaattaagctgttttgaaaaggactcaaattcaaaggatctgtcacctggtaatgatatcagaaaaggtgtgagttcagtttctcgttgtaaggagaatgacaagttggataaagatgacaaaagcaagagtagcggaagttacatctacgttaatgatggtgacgattcagaggaaatggagatcaacagtagcattcctgaaaacttcaatgtgacaaaatttgcatgttcttcacacccatcggtgaaatcagtcagtaaggtcaaaggcgtcatggacaaaaaagaaaaggaaggttctaaatccttcaactccaggactaaatctgcatatacacccctggaactacagtttcttgaagtgaaatctaaatactctgacgtccttttatttgttgagtgtgggtataggtacagattctttggagaggatgctgagatagctgctaaggaactgaacattatgtgtcacatggatcataattttaacactgcaagtattcctacacacagactgcatgttcatgtcaaaaggttggttagtaaaggttacaaagttggagtagtaaagcagacagagacggctgccctgaaggcagctggggaaaacaagagcaaggttttcacgagagagctacaggcactgtatacaaagactacattagttggtgaagatatgaagactgtggaagatttggatgaagttgatcctgtggagatggggagtgggtatcttatgtgtcttgttgaagttgatctacaggactcaaaaacaagcagtgacaagaaaatctttggcttagtggctgttcaaccttccactggtgatgtcatctatgatgaatttgaagatgggtcaagttacacagagctggaatctcattttgagcatatcagcccagaagaattactccttcctgaatctctaactgtacgaacagagaacttcatcagggattacgttacgagggttcaaagaccagaggacagtataagacttgaaagaatgtctgatcagcaatttgatcacttagctgccctgaaccgtatcactgaattctatgaaaaacagaagccagtgagaaatgaggaaatctgcaaagttaacatcacaacagactcaaatgagcaggaaaaatgctcagccttggaaataatcctcaagttacccaaatcagtgcagacatgttttgcagcacttatccactacctggaagacttcaagctagaaaaagtccttagattaacaagagaaggcgataaaacaaagctgttttgtgaccaaacaaagttcccagcgataatgaaatgcaacctggaaatcgaaaggattcaagcagagttaaagagccatcgttctgagtttagacagattttgcggcatccatcactggattactgttgtgtagctggaaatgagttcttgattgaagtgaagaatacaaatttaaaaatggtacccggtgactgggtcaaaataagcgccaccaagcaagtgtcaagattcaggacgccattcgtggaggacaaattcaaactcctctgccagtggcgggaacagctgtcaatcacatgtcaggaggcgtggctggaattcctggcgctgttttcagaaggttgttccagatatcgccgagctgttcatcacatcgctacactcgactgtctcttttccttggctgctgttgctaagcaaacgggtttcacaaggccggttgtgaaagactgtgaagcgcacatttacatcaaacagggacgacatccagtgctggattcccttctgccagaaaatgaacagtttgtcccaaatgatacacacatgaacgtcaacagtaaccgctgtatgatcatcactggaccaaatatgggcgggaagagctctcacataaaacaggttgccttgattgctattctggcccaggtcggctcgtttgtaccagccgaggaagcacgggttggagttctggacgcggtttttaccagaatgggagctatggacaacatttataaaggtcaaagcacatttatggtcgaactgcaggtatccagcctgactctatttgtaacacactacccgtcactagctgagctggacaccatcttcccaaaccaagtcaccaacaaccacatggcctttatgacgtcagaagaggcacaagatcaacaaagcgccaaacagtgtactgagggaggggaggctgaggagcatcagttaccaactacggtaccgtcagtcacgtttttgtatcacttggtaaatggagctgcagcgagaagctacgggttgaatgttgctcgtttggcgggaattccaaatgaaatactcacagaggctgctgcaaagtcacgagaactggagaacttgatcatcacaagacgctccatcaagtctagtttccaggaactgttttcaaacaaacctataacacacgaggcgatcaaagacttaaggatggcaatggaaaagattgcacccgaaggaaaagaaatgaaatttgatcatagctcttga

Transcript

evm.model.Ap1.422

ATGAGGAAAATAAACCTCGGAAAGCTGCGGTGCTCAACACATTCTTCCTCTAATGGTCATTCTCCAAGTGGCGCATCCACAAAGAATCAATCACAGTCTACGATTTCGAGTTTCTTCGTAAGAAAACCGTCTTCAAAGGCGAAGGGAACTGACAACAGTGAAAGCAAATCAGCAGTGAATGGAGATACTAGTGGTGCAAAAGCTGCTAAGAGAACTGCCAGCAAATTATCTCAGTATGAGAACAATGGTGACTGCAATGTGCAGAATTCTAAAAAGCAAAGACTTCATCTGGATCAGTCAGTACAGGATGACAATCATTTGACTTTGACAAACAAGGAAACATTAAGTTCTTCCACAATGGTTAAATTAAGCTGTTTTGAAAAGGACTCAAATTCAAAGGATCTGTCACCTGGTAATGATATCAGAAAAGGTGTGAGTTCAGTTTCTCGTTGTAAGGAGAATGACAAGTTGGATAAAGATGACAAAAGCAAGAGTAGCGGAAGTTACATCTACGTTAATGATGGTGACGATTCAGAGGAAATGGAGATCAACAGTAGCATTCCTGAAAACTTCAATGTGACAAAATTTGCATGTTCTTCACACCCATCGGTGAAATCAGTCAGTAAGGTCAAAGGCGTCATGGACAAAAAAGAAAAGGAAGGTTCTAAATCCTTCAACTCCAGGACTAAATCTGCATATACACCCCTGGAACTACAGTTTCTTGAAGTGAAATCTAAATACTCTGACGTCCTTTTATTTGTTGAGTGTGGGTATAGGTACAGATTCTTTGGAGAGGATGCTGAGATAGCTGCTAAGGAACTGAACATTATGTGTCACATGGATCATAATTTTAACACTGCAAGTATTCCTACACACAGACTGCATGTTCATGTCAAAAGGTTGGTTAGTAAAGGTTACAAAGTTGGAGTAGTAAAGCAGACAGAGACGGCTGCCCTGAAGGCAGCTGGGGAAAACAAGAGCAAGGTTTTCACGAGAGAGCTACAGGCACTGTATACAAAGACTACATTAGTTGGTGAAGATATGAAGACTGTGGAAGATTTGGATGAAGTTGATCCTGTGGAGATGGGGAGTGGGTATCTTATGTGTCTTGTTGAAGTTGATCTACAGGACTCAAAAACAAGCAGTGACAAGAAAATCTTTGGCTTAGTGGCTGTTCAACCTTCCACTGGTGATGTCATCTATGATGAATTTGAAGATGGGTCAAGTTACACAGAGCTGGAATCTCATTTTGAGCATATCAGCCCAGAAGAATTACTCCTTCCTGAATCTCTAACTGTACGAACAGAGAACTTCATCAGGGATTACGTTACGAGGGTTCAAAGACCAGAGGACAGTATAAGACTTGAAAGAATGTCTGATCAGCAATTTGATCACTTAGCTGCCCTGAACCGTATCACTGAATTCTATGAAAAACAGAAGCCAGTGAGAAATGAGGAAATCTGCAAAGTTAACATCACAACAGACTCAAATGAGCAGGAAAAATGCTCAGCCTTGGAAATAATCCTCAAGTTACCCAAATCAGTGCAGACATGTTTTGCAGCACTTATCCACTACCTGGAAGACTTCAAGCTAGAAAAAGTCCTTAGATTAACAAGAGAAGGCGATAAAACAAAGCTGTTTTGTGACCAAACAAAGTTCCCAGCGATAATGAAATGCAACCTGGAAATCGAAAGGATTCAAGCAGAGTTAAAGAGCCATCGTTCTGAGTTTAGACAGATTTTGCGGCATCCATCACTGGATTACTGTTGTGTAGCTGGAAATGAGTTCTTGATTGAAGTGAAGAATACAAATTTAAAAATGGTACCCGGTGACTGGGTCAAAATAAGCGCCACCAAGCAAGTGTCAAGATTCAGGACGCCATTCGTGGAGGACAAATTCAAACTCCTCTGCCAGTGGCGGGAACAGCTGTCAATCACATGTCAGGAGGCGTGGCTGGAATTCCTGGCGCTGTTTTCAGAAGGTTGTTCCAGATATCGCCGAGCTGTTCATCACATCGCTACACTCGACTGTCTCTTTTCCTTGGCTGCTGTTGCTAAGCAAACGGGTTTCACAAGGCCGGTTGTGAAAGACTGTGAAGCGCACATTTACATCAAACAGGGACGACATCCAGTGCTGGATTCCCTTCTGCCAGAAAATGAACAGTTTGTCCCAAATGATACACACATGAACGTCAACAGTAACCGCTGTATGATCATCACTGGACCAAATATGGGCGGGAAGAGCTCTCACATAAAACAGGTTGCCTTGATTGCTATTCTGGCCCAGGTCGGCTCGTTTGTACCAGCCGAGGAAGCACGGGTTGGAGTTCTGGACGCGGTTTTTACCAGAATGGGAGCTATGGACAACATTTATAAAGGTCAAAGCACATTTATGGTCGAACTGCAGGTATCCAGCCTGACTCTATTTGTAACACACTACCCGTCACTAGCTGAGCTGGACACCATCTTCCCAAACCAAGTCACCAACAACCACATGGCCTTTATGACGTCAGAAGAGGCACAAGATCAACAAAGCGCCAAACAGTGTACTGAGGGAGGGGAGGCTGAGGAGCATCAGTTACCAACTACGGTACCGTCAGTCACGTTTTTGTATCACTTGGTAAATGGAGCTGCAGCGAGAAGCTACGGGTTGAATGTTGCTCGTTTGGCGGGAATTCCAAATGAAATACTCACAGAGGCTGCTGCAAAGTCACGAGAACTGGAGAACTTGATCATCACAAGACGCTCCATCAAGTCTAGTTTCCAGGAACTGTTTTCAAACAAACCTATAACACACGAGGCGATCAAAGACTTAAGGATGGCAATGGAAAAGATTGCACCCGAAGGAAAAGAAATGAAATTTGATCATAGCTCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20585	DNA mismatch repair protein Msh3 OS=Homo sapiens OX=9606 GN=MSH3 PE=1 SV=4
P13705	DNA mismatch repair protein Msh3 OS=Mus musculus OX=10090 GN=Msh3 PE=2 SV=3
B0YCF6	DNA mismatch repair protein msh3 OS=Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 GN=msh3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan
PF05190 all species →	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05188 all species →	MutS_II	MutS domain II	Domain	Interproscan
PF01624 all species →	MutS_I	MutS domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036678 all species →	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR007861 all species →	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR007860 all species →	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR016151 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR007695 all species →	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR017261 all species →	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006312 all species →	Biological Process	mitotic recombination	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.422.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.