Detailed information of evm.model.Ap1.499 in Astrangia poculata

Genomic Location: Ap1:4581196...4599202
NR annotation: XP_020631932.1, LOW QUALITY PROTEIN: fibrillin-3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P35556Fibrillin-2 OS=Homo sapiens OX=9606 GN=FBN2 PE=1 SV=3
Q61555Fibrillin-2 OS=Mus musculus OX=10090 GN=Fbn2 PE=1 SV=2
Q75N90Fibrillin-3 OS=Homo sapiens OX=9606 GN=FBN3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003150 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan
PF12662
all species →		cEGFComplement Clr-like EGF-likeDomainInterproscan
PF00683
all species →		TBTB domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR009030
all species →		Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR036773
all species →		Homologous_superfamilyTGF-beta binding (TB) domain superfamilyInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR026823
all species →		DomainComplement Clr-like EGF domainInterproscan
IPR017878
all species →		DomainTB domainInterproscan
IPR050751
all species →		FamilyExtracellular matrix structural proteinInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24034
all species →		EGF-LIKE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.499.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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