Gene detail

Detailed information of evm.model.Ap1.549 in Astrangia poculata

Genomic Location: Ap1:5075692...5082354
NR annotation: XP_020631959.1, OTU domain-containing protein 7B-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.549

atggacgacactctgagtcaattcattgaaaaaactggaacggatcccagcttagcaagagacttactcgaaagtacaaaatggaacgtaaacgaagcgctgaaagcttttgaaacgctgtctttaggatctgctacgagacaaaacaaagaaacaagcggcgattataaccgcgttactagcggaaaagctaaaagaggactttcaatggtgaatgcagacattgtagtagaagcgaggcataaagttattgaggacaaggtgccaggaacagacgaaagatatgagagatttgaggaaatgtcggatttcactttcgttttgccggatttatccaacttctctgaagaattgagtgacttcctacggagggatttgattgaaacctcagctttagtggctctggaacaagcaggatggttaaactggtgggccgatgtgggtgtttgccgacgtctccttcctcttgcaactgtgggcgatggtaactgtttattacatgctgcatctcttggaatgtggggattccacgatcgcttgttaaccctgcgcaaggcactttactgtacactcacaagccacctggccaagggagctatcaaaaggcgctggaggttgcaacagtgggaaaggaacattaaagctggtggactcctgtactcagaggaagaatgggagaaagagtggcaggaggtgctacgtatagcttctacacagcgtagattagattatgaacaaatggtcgcagaaaacaggaaaggaggagagactgttgcaactctggccactatagctgagaaggacagtgatgatgcaactgaagtcactgcaaaagaggaccctgcagttgaccaatcagagacaggagaaggagttgaagtgaaagacaattatgaacctcaaagtgacgcttctgcgcaagatgaaccaaaagaaaaagaaaccgaggagactgaggcagagggaggggcttttgaaagtctcgaagacattcatgtttttgttctagcacatgttctgagacgtccaattataatcattgctgaccaatttttgtatggatttggaggtgaaccaatcgcacccattccatttggaggagtgtatcttccactagaatgtgatccaagtacatgccttaaaagtcccttggtgcttgcttttgattcagctcacttttcccctctggttccttctgacgaaaagaaagacaccaagaatagttctttgaaagcgtctgttcctctcgttggaccaaactatgagttgttaccaatccagttctctgtagatcctggggaagattttttgtggagtagcctggatggtgattccagtattgcagacaatttggctttaagtatggataaaaagctggtgcttttgaagaaatatttaaatgtcgatttgataaaaataccaaatgcgagcaagaaagattcttctgaagatagcaagtcagcagtcaaagctgagaaatcgtctgaggcaggtagcagtgatagcggaactgctaagcctgagaagaaactgccatcaaaatctgttgaaaagaaagagaagtcttggattgcaacacagattatgaaagtgggtacaatggctggtgtggtgggaggtgttgtccacagtgatatttatgtcgcaaaactgcaaactgacaagaaacctgtgtactacgacaagatgatggacaactatattcagtcagccaagctccgatttgaagaagaaaagaagtctcaagcaaaagctaccaacagtgcaggaaacactggagagaaacctcagccgtgtatcaaccctggctgtcacctgtatgggacttcagctacaaattacctttgttccggttgttacaaaactcagaaatcttacagcgaaacaggtcgctatcttgatggctcggcatcaactactggcaggtcatctgcgtcaaattacgataacagtggattaccgagttacttgcctcctccctcgtactcagcttatgttccttatgggtattttggtcaggatcgcagaacacaaagttacaacacaacaactgtcaatcaaaggactgcaaactcaagtagagatgctcaaagcgggctaccttcatatgatgacgtaatggaactaagtaaaagtacagcttctggtctgccttccagttccgccgtcaagcttgcttcaactggtgaaagttcagtacagggtcacagcacaacaggtcaatctgtggtaaagtgtgttggcaaagactgccagttttttggcagtccaggaaacaaaggatattgttctgcatgctacaaaacatatcaaaagtcattgaagtatgtaatagaagataatgaggcatcaaaatctaaagttgtctga

Transcript

evm.model.Ap1.549

ATGGACGACACTCTGAGTCAATTCATTGAAAAAACTGGAACGGATCCCAGCTTAGCAAGAGACTTACTCGAAAGTACAAAATGGAACGTAAACGAAGCGCTGAAAGCTTTTGAAACGCTGTCTTTAGGATCTGCTACGAGACAAAACAAAGAAACAAGCGGCGATTATAACCGCGTTACTAGCGGAAAAGCTAAAAGAGGACTTTCAATGGTGAATGCAGACATTGTAGTAGAAGCGAGGCATAAAGTTATTGAGGACAAGGTGCCAGGAACAGACGAAAGATATGAGAGATTTGAGGAAATGTCGGATTTCACTTTCGTTTTGCCGGATTTATCCAACTTCTCTGAAGAATTGAGTGACTTCCTACGGAGGGATTTGATTGAAACCTCAGCTTTAGTGGCTCTGGAACAAGCAGGATGGTTAAACTGGTGGGCCGATGTGGGTGTTTGCCGACGTCTCCTTCCTCTTGCAACTGTGGGCGATGGTAACTGTTTATTACATGCTGCATCTCTTGGAATGTGGGGATTCCACGATCGCTTGTTAACCCTGCGCAAGGCACTTTACTGTACACTCACAAGCCACCTGGCCAAGGGAGCTATCAAAAGGCGCTGGAGGTTGCAACAGTGGGAAAGGAACATTAAAGCTGGTGGACTCCTGTACTCAGAGGAAGAATGGGAGAAAGAGTGGCAGGAGGTGCTACGTATAGCTTCTACACAGCGTAGATTAGATTATGAACAAATGGTCGCAGAAAACAGGAAAGGAGGAGAGACTGTTGCAACTCTGGCCACTATAGCTGAGAAGGACAGTGATGATGCAACTGAAGTCACTGCAAAAGAGGACCCTGCAGTTGACCAATCAGAGACAGGAGAAGGAGTTGAAGTGAAAGACAATTATGAACCTCAAAGTGACGCTTCTGCGCAAGATGAACCAAAAGAAAAAGAAACCGAGGAGACTGAGGCAGAGGGAGGGGCTTTTGAAAGTCTCGAAGACATTCATGTTTTTGTTCTAGCACATGTTCTGAGACGTCCAATTATAATCATTGCTGACCAATTTTTGTATGGATTTGGAGGTGAACCAATCGCACCCATTCCATTTGGAGGAGTGTATCTTCCACTAGAATGTGATCCAAGTACATGCCTTAAAAGTCCCTTGGTGCTTGCTTTTGATTCAGCTCACTTTTCCCCTCTGGTTCCTTCTGACGAAAAGAAAGACACCAAGAATAGTTCTTTGAAAGCGTCTGTTCCTCTCGTTGGACCAAACTATGAGTTGTTACCAATCCAGTTCTCTGTAGATCCTGGGGAAGATTTTTTGTGGAGTAGCCTGGATGGTGATTCCAGTATTGCAGACAATTTGGCTTTAAGTATGGATAAAAAGCTGGTGCTTTTGAAGAAATATTTAAATGTCGATTTGATAAAAATACCAAATGCGAGCAAGAAAGATTCTTCTGAAGATAGCAAGTCAGCAGTCAAAGCTGAGAAATCGTCTGAGGCAGGTAGCAGTGATAGCGGAACTGCTAAGCCTGAGAAGAAACTGCCATCAAAATCTGTTGAAAAGAAAGAGAAGTCTTGGATTGCAACACAGATTATGAAAGTGGGTACAATGGCTGGTGTGGTGGGAGGTGTTGTCCACAGTGATATTTATGTCGCAAAACTGCAAACTGACAAGAAACCTGTGTACTACGACAAGATGATGGACAACTATATTCAGTCAGCCAAGCTCCGATTTGAAGAAGAAAAGAAGTCTCAAGCAAAAGCTACCAACAGTGCAGGAAACACTGGAGAGAAACCTCAGCCGTGTATCAACCCTGGCTGTCACCTGTATGGGACTTCAGCTACAAATTACCTTTGTTCCGGTTGTTACAAAACTCAGAAATCTTACAGCGAAACAGGTCGCTATCTTGATGGCTCGGCATCAACTACTGGCAGGTCATCTGCGTCAAATTACGATAACAGTGGATTACCGAGTTACTTGCCTCCTCCCTCGTACTCAGCTTATGTTCCTTATGGGTATTTTGGTCAGGATCGCAGAACACAAAGTTACAACACAACAACTGTCAATCAAAGGACTGCAAACTCAAGTAGAGATGCTCAAAGCGGGCTACCTTCATATGATGACGTAATGGAACTAAGTAAAAGTACAGCTTCTGGTCTGCCTTCCAGTTCCGCCGTCAAGCTTGCTTCAACTGGTGAAAGTTCAGTACAGGGTCACAGCACAACAGGTCAATCTGTGGTAAAGTGTGTTGGCAAAGACTGCCAGTTTTTTGGCAGTCCAGGAAACAAAGGATATTGTTCTGCATGCTACAAAACATATCAAAAGTCATTGAAGTATGTAATAGAAGATAATGAGGCATCAAAATCTAAAGTTGTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GQQ9	OTU domain-containing protein 7B OS=Homo sapiens OX=9606 GN=OTUD7B PE=1 SV=1
B2RUR8	OTU domain-containing protein 7B OS=Mus musculus OX=10090 GN=Otud7b PE=1 SV=1
Q8TE49	OTU domain-containing protein 7A OS=Homo sapiens OX=9606 GN=OTUD7A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008410 (this species only)
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species
Ubiquitin family	UBD\|ZnF\|ZnF_A20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF01754 all species →	zf-A20	A20-like zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR002653 all species →	Domain	Zinc finger, A20-type	Interproscan
IPR051346 all species →	Family	OTU Domain-Containing Deubiquitinase	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367 all species →	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035871 all species →	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0070530 all species →	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0070536 all species →	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0071108 all species →	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0071947 all species →	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11860	OTUD7A_B; OTU domain-containing protein 7	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.