Gene detail

Detailed information of evm.model.Ap1.600 in Astrangia poculata

Genomic Location: Ap1:5743919...5749976
NR annotation: KAJ7385365.1, hypothetical protein OS493_016445 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P80585	Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2
O75347	Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3
Q6PEC1	Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008249 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02970 all species →	TBCA	Tubulin binding cofactor A	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004226 all species →	Family	Tubulin binding cofactor A	Interproscan
IPR036126 all species →	Homologous_superfamily	Tubulin binding cofactor A superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21500 all species →	TUBULIN-SPECIFIC CHAPERONE A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17292	TBCA; tubulin-specific chaperone A	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.