Detailed information of evm.model.Ap1.608 in Astrangia poculata

Genomic Location: Ap1:5841143...5852219
NR annotation: CAH3169321.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P20700Lamin-B1 OS=Homo sapiens OX=9606 GN=LMNB1 PE=1 SV=2
P14731Lamin-B1 OS=Gallus gallus OX=9031 GN=LMNB1 PE=1 SV=1
P70615Lamin-B1 OS=Rattus norvegicus OX=10116 GN=Lmnb1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003515 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00932
all species →		LTDLamin Tail DomainDomainInterproscan
PF00038
all species →		FilamentIntermediate filament proteinCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001322
all species →		DomainLamin tail domainInterproscan
IPR039008
all species →		DomainIntermediate filament, rod domainInterproscan
IPR036415
all species →		Homologous_superfamilyLamin tail domain superfamilyInterproscan
IPR018039
all species →		Conserved_siteIntermediate filament protein, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45721
all species →		LAMIN DM0-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005200
all species →		Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005635
all species →		Cellular Componentnuclear envelopeInterproscan
GO:0005652
all species →		Cellular Componentnuclear laminaInterproscan
GO:0006998
all species →		Biological Processnuclear envelope organizationInterproscan
GO:0007097
all species →		Biological Processnuclear migrationInterproscan
GO:0031507
all species →		Biological Processheterochromatin formationInterproscan
GO:0051664
all species →		Biological Processnuclear pore localizationInterproscan
GO:0090435
all species →		Biological Processprotein localization to nuclear envelopeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.608.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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