Detailed information of evm.model.Ap1.609 in Astrangia poculata

Genomic Location: Ap1:5854375...5864279
NR annotation: CAH3169321.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P14732Lamin-B2 OS=Gallus gallus OX=9031 GN=LMNB2 PE=1 SV=1
P09010Lamin-B1.S OS=Xenopus laevis OX=8355 GN=lmnb1.S PE=2 SV=1
Q3ZD69Prelamin-A/C OS=Sus scrofa OX=9823 GN=LMNA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003515 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00038
all species →		FilamentIntermediate filament proteinCoiled-coilInterproscan
PF00932
all species →		LTDLamin Tail DomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039008
all species →		DomainIntermediate filament, rod domainInterproscan
IPR001322
all species →		DomainLamin tail domainInterproscan
IPR036415
all species →		Homologous_superfamilyLamin tail domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45721
all species →		LAMIN DM0-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005200
all species →		Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005635
all species →		Cellular Componentnuclear envelopeInterproscan
GO:0005652
all species →		Cellular Componentnuclear laminaInterproscan
GO:0006998
all species →		Biological Processnuclear envelope organizationInterproscan
GO:0007097
all species →		Biological Processnuclear migrationInterproscan
GO:0031507
all species →		Biological Processheterochromatin formationInterproscan
GO:0051664
all species →		Biological Processnuclear pore localizationInterproscan
GO:0090435
all species →		Biological Processprotein localization to nuclear envelopeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07611LMNB; lamin B-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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