Detailed information of evm.model.Ap1.659 in Astrangia poculata

Genomic Location: Ap1:6383441...6390896
NR annotation: KAJ7380284.1, negative regulation of transcription, DNA-templated [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8WXI9Transcriptional repressor p66-beta OS=Homo sapiens OX=9606 GN=GATAD2B PE=1 SV=1
Q8VHR5Transcriptional repressor p66-beta OS=Mus musculus OX=10090 GN=Gatad2b PE=1 SV=1
Q86YP4Transcriptional repressor p66-alpha OS=Homo sapiens OX=9606 GN=GATAD2A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008710 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16563
all species →		P66_CCCoiled-coil and interaction region of P66A and P66B with MBD2Coiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032346
all species →		DomainTranscriptional repressor p66, coiled-coil MBD2-interaction domainInterproscan
IPR040386
all species →		FamilyTranscriptional repressor p66Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13455
all species →		TRANSCRIPTIONAL REPRESSOR P66-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0016581
all species →		Cellular ComponentNuRD complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23194GATAD2; transcriptional repressor p66-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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