Detailed information of evm.model.Ap1.669 in Astrangia poculata

Genomic Location: Ap1:6467892...6489942
NR annotation: RMX58234.1, hypothetical protein pdam_00000057 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2PZL6Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q6V0I7Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2
P33450Cadherin-related tumor suppressor OS=Drosophila melanogaster OX=7227 GN=ft PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001840 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028
all species →
CadherinCadherin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015919
all species →
Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR002126
all species →
DomainCadherin-likeInterproscan
IPR035976
all species →
Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000436
all species →
DomainSushi/SCR/CCP domainInterproscan
IPR050174
all species →
FamilyProtocadherin/Cadherin-related Cell AdhesionInterproscan
IPR006644
all species →
DomainDystroglycan-type cadherin-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24028
all species →
CADHERIN-87AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0007156
all species →
Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005887
all species →
Cellular Componentplasma membraneInterproscan
GO:0007155
all species →
Biological Processcell adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16669FAT4; protocadherin Fat 4-Cell adhesion moleculesko04515deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP