Gene detail

Detailed information of evm.model.Ap1.670 in Astrangia poculata

Genomic Location: Ap1:6498209...6506568
NR annotation: XP_020610730.1, transcription initiation factor IIA subunit 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08949	Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2a1 PE=1 SV=1
Q99PM3	Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1 PE=1 SV=2
Q5RCU0	Transcription initiation factor IIA subunit 1 OS=Pongo abelii OX=9601 GN=GTF2A1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03153 all species →	TFIIA	Transcription factor IIA, alpha/beta subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009088 all species →	Homologous_superfamily	Transcription factor IIA, beta-barrel	Interproscan
IPR004855 all species →	Family	Transcription factor IIA, alpha/beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12694 all species →	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005672 all species →	Cellular Component	transcription factor TFIIA complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03122	TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.