Gene detail

Detailed information of evm.model.Ap1.672 in Astrangia poculata

Genomic Location: Ap1:6517698...6552656
NR annotation: XP_020610661.1, C-myc promoter-binding protein-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.672

atggttgaccgtgagaagccccagcgagtaggcgactactttgtagtagcaggcctcggcaatggcgagtccagtaatgccattcagcttgatgacgacagacatgttttggagccaatcacagatgttactgtgatatttccgagtttgggtgaaaggccacccaagggttacaaatgtatagacaaaacaccagcaggctttccagcaaatctcaaccatggatcaataaggcagccatcatgtttcctttgtgttcgcagaggaacagacaggcctccactaactgatattggtgtcctgtatgaaggaaaagagcgattaatggcaggatgtgacatcattgtttatacagagacaggaaaatcagccaatgtcaataacagtggtggaaatagaacattcatcacatatcgtcgagcaccacagaagatggcacactcctccctggcagtcacagagatttgtgttattatagcaagcaagaatgaaaagccacctcatgcattttgtttaattgacaagaatctcaacaaaggcatggttggatctgacgtatacctttgttacagaaaatcattagcaaggaggcgttccatcatgtaccctgcagaggtattaagtcggttccctgtggaggattatgaaggctttccattaccagacaagatttcaatgttctgtcttcctcaaggggcaatcatcgagtgttggccagaaaattcacaacatcctcttccttctttctctacatttgtactcactggggcatcagggcaaaagatatatggtgctgctgtgacattctttgaagttctgcctgaggagcagctaacagaggggagaaaaaaagccttgaagctgaatgatgataacggttgggaagagggaaagaaagttgctcatacaaacaagtgcatctgtgtattgtcacactggccattctttgaagctttcaaaaagttcctgtcgcagttgtatcggatttctgtatcagcacaaccactaccaattgaaaggtatatagcaattctgatgcttgatgttccttttccatcacctcaaagaccgagaattcttgtacagacaagcatgtatgaccccttcgaaatcagccaactttctcacactcctctgccagtcagtggtgcctcatacatagccatgcttcgctacctgcatccagacaatgctatgctgctgttttatcttgttctcaccgaacataaaattttaatccactcactaagaccgactcttatgacaagtattgcagaagccataacaacgacctgtagcagtgttggaggaatagctactgggccaatgataagtgtgttagacttcagatcaagcgatctgggttcagcactggccgatgtcgcattgtctttgcgaaaaatactttactctcacagtgcctctcagtctccccacctaggactcctgtttccattcagttggcagtgcccatatgtcccgctttgtcctttgggtttaaatgatgttcttgatgccccttgtccttttattgtaggcattgattcacgctactttgatcagtatgatccacctgatgatgtcacctgtgttgacctggatactaacatgatctcactggagaatgaattcaaaagtgttagttggaaaaatcttccaaagaaaccagggaaggtcttgcaagaaagattgaatgagctttactatcagttatatcaactgtatcacaaggaaagggaaacatcagggggagatattatcgagacggccattgagcttgctccgctagatcacgatacttcgcactccagaaaaaggcttcaactagaagtagccattcaagatgctttcttgcggtttatgggaacaattctcaaaggctacgactctttcctgaaaccaattacttcagcgcccacacaagagacatgcgatttgacatcactgtttgacctcgatggttttctcaagagtcgtcccagttcacaatcaaagtttttccagactctatcaaggacacagatgttcagcaggtttattgagcagagatcatttgtgacatcacaagactctttattggccttctttgacaactgtttaggaaaacttgaagtatcaccagaaagccgtctagttgaagtggatgaatcagttgcaaggggtggccagaggacttatgttgtcactccaccagacacgtccaacattaataaaggaaagctctacacatacccagtgttcccagttttgaatgttgctctcatgaagccagagaagctgtcgcttcacgcacagtccataatgaccccacccgtgtcccctgtggctaagagaacaaaagctgaaagacatgaatctgttctgatggcaaaaaagaactctgcaagtcctagcaactgggccaagtgtttattagcgcattgttacagtctatggtttattcatctgcctgcatatgttaaacgtcaccacaacaaagccaaggtgttacatgtggcttttgagatcttgtgcaagaaaaagaaaggagtcaaacttccagacgaggtgtgttaccgagtgttaatgcagctttgtggacaatacggccaccctgctcttgctgtgaaggttttgtttgagatgaaaaaccaaggaataaaaccaaatgctgtgacatacgggtactacaacagggctgttatggaaggaaaatggccgtccaacacgaccagttcccacatgtggaataaactgaggaatttctttgctgctgtgtacgagcttcagagactagcgaaactggcacataataacaaagaagactccttgtccccgtcaggatcaggcagcgacttggatgtcacagactcgcctagaagaatgaccttgaaaaaacccgaccggtcacgcacgccgtcacgcgagcgcgaaaaagctctgtcacacgaacggctgctcgacttgggagagccaaacgacagtgaaggcagaagtacgccggagagagaactcaaattacgacgagaaagaacgatcagcgaaatgtccaccgcttccgaagcgacagatcttctggacttgtctactacctccatcgacggtgcggctttctcgcaaagaaaacgggcgacttacggtagaaccattagcgaaacgtcagttctttcagcggcgtttagtgacggttcgcggcattctcagctgtatatcaatgcgaacagcgaggattctgacccatatgagtacacgaccaggatgttggacgatgttatttttggtctcccttctggcttgcagcccgacactgcgctcgaagccgtgctgtgcacttgccatcagtgcgtgaaatgtgggcgttatctgtacgatgaagagatcttggctgggtggactgcagacgactctaatctgaacacaggatgtccatactgccaaacacagcaagtcgcaagtctcacaattaaaatcaaggattatcgcaactgtttttcatctcacccgagctctgagctatcggccagtatcaacagcttcggaagcaacgaattgttgccgggaaattccgaagtggagccgagctccggaccgctcagcaactctgtgccgaccacgattgaatccaatctcttgatgcagaagctcaccagtccccagcgtccactcagcgccgcgatgtctcccccagcctccaacccagtccccatccgggctagccatcatcgcatgcgtcatagcattagtgctccgtcaagtgctaacgccagtccctcggggagtctacacggcagtccgaggcctgggtcgtggatttcgcgtgcacgtagtagtaacagcacttgcggtagctacgggagtactagttggtatgtgtctagagccccggaagaaagggatttaattacagtgccatatctcaatcctttagttttgagaaaagagctggagaatatgtttgaaaatgacggcatcactgcacttcagtttccagaagtcgtgcaagagaagagcatcatcttttggaacttggtgtggtatttcaagcggcttgaacttccctcacacttggcagatcacgtgttgtcaacgtaccccagcaacgagagagctgacagatttgaggaacgccgcagcaactcggggcttggtacccaggtgttggtatccacgtcatgggacagtgaaagggaagaatatgacatggttccactgtacgtcctctggaatgcgccagctgaccagcagggttctcttatggacaaaggacttacaggcagaaatgtaatgcagtccgttgtggctcatgttcaagagaatgatgtttacagcccaactgtgatcctactggaggaaagaaaccggcaaaagaacatcaacccgaacgcaaaatggagtatttatcgagaattgttgttcttgtcactgactgcttgcggagctgaaaacatcgacgttgacgccttcgacaaggaatacagacgagcatataaacgactgttcgagtccaagaactactcagacctgctatgtccggaagacagaaacccgccgttacgatctgtgtgctgcaggcgcgtgttcgacccacctatcctccaacccaggcttccgcagtacctcgttaacactttttcgtga

Transcript

evm.model.Ap1.672

ATGGTTGACCGTGAGAAGCCCCAGCGAGTAGGCGACTACTTTGTAGTAGCAGGCCTCGGCAATGGCGAGTCCAGTAATGCCATTCAGCTTGATGACGACAGACATGTTTTGGAGCCAATCACAGATGTTACTGTGATATTTCCGAGTTTGGGTGAAAGGCCACCCAAGGGTTACAAATGTATAGACAAAACACCAGCAGGCTTTCCAGCAAATCTCAACCATGGATCAATAAGGCAGCCATCATGTTTCCTTTGTGTTCGCAGAGGAACAGACAGGCCTCCACTAACTGATATTGGTGTCCTGTATGAAGGAAAAGAGCGATTAATGGCAGGATGTGACATCATTGTTTATACAGAGACAGGAAAATCAGCCAATGTCAATAACAGTGGTGGAAATAGAACATTCATCACATATCGTCGAGCACCACAGAAGATGGCACACTCCTCCCTGGCAGTCACAGAGATTTGTGTTATTATAGCAAGCAAGAATGAAAAGCCACCTCATGCATTTTGTTTAATTGACAAGAATCTCAACAAAGGCATGGTTGGATCTGACGTATACCTTTGTTACAGAAAATCATTAGCAAGGAGGCGTTCCATCATGTACCCTGCAGAGGTATTAAGTCGGTTCCCTGTGGAGGATTATGAAGGCTTTCCATTACCAGACAAGATTTCAATGTTCTGTCTTCCTCAAGGGGCAATCATCGAGTGTTGGCCAGAAAATTCACAACATCCTCTTCCTTCTTTCTCTACATTTGTACTCACTGGGGCATCAGGGCAAAAGATATATGGTGCTGCTGTGACATTCTTTGAAGTTCTGCCTGAGGAGCAGCTAACAGAGGGGAGAAAAAAAGCCTTGAAGCTGAATGATGATAACGGTTGGGAAGAGGGAAAGAAAGTTGCTCATACAAACAAGTGCATCTGTGTATTGTCACACTGGCCATTCTTTGAAGCTTTCAAAAAGTTCCTGTCGCAGTTGTATCGGATTTCTGTATCAGCACAACCACTACCAATTGAAAGGTATATAGCAATTCTGATGCTTGATGTTCCTTTTCCATCACCTCAAAGACCGAGAATTCTTGTACAGACAAGCATGTATGACCCCTTCGAAATCAGCCAACTTTCTCACACTCCTCTGCCAGTCAGTGGTGCCTCATACATAGCCATGCTTCGCTACCTGCATCCAGACAATGCTATGCTGCTGTTTTATCTTGTTCTCACCGAACATAAAATTTTAATCCACTCACTAAGACCGACTCTTATGACAAGTATTGCAGAAGCCATAACAACGACCTGTAGCAGTGTTGGAGGAATAGCTACTGGGCCAATGATAAGTGTGTTAGACTTCAGATCAAGCGATCTGGGTTCAGCACTGGCCGATGTCGCATTGTCTTTGCGAAAAATACTTTACTCTCACAGTGCCTCTCAGTCTCCCCACCTAGGACTCCTGTTTCCATTCAGTTGGCAGTGCCCATATGTCCCGCTTTGTCCTTTGGGTTTAAATGATGTTCTTGATGCCCCTTGTCCTTTTATTGTAGGCATTGATTCACGCTACTTTGATCAGTATGATCCACCTGATGATGTCACCTGTGTTGACCTGGATACTAACATGATCTCACTGGAGAATGAATTCAAAAGTGTTAGTTGGAAAAATCTTCCAAAGAAACCAGGGAAGGTCTTGCAAGAAAGATTGAATGAGCTTTACTATCAGTTATATCAACTGTATCACAAGGAAAGGGAAACATCAGGGGGAGATATTATCGAGACGGCCATTGAGCTTGCTCCGCTAGATCACGATACTTCGCACTCCAGAAAAAGGCTTCAACTAGAAGTAGCCATTCAAGATGCTTTCTTGCGGTTTATGGGAACAATTCTCAAAGGCTACGACTCTTTCCTGAAACCAATTACTTCAGCGCCCACACAAGAGACATGCGATTTGACATCACTGTTTGACCTCGATGGTTTTCTCAAGAGTCGTCCCAGTTCACAATCAAAGTTTTTCCAGACTCTATCAAGGACACAGATGTTCAGCAGGTTTATTGAGCAGAGATCATTTGTGACATCACAAGACTCTTTATTGGCCTTCTTTGACAACTGTTTAGGAAAACTTGAAGTATCACCAGAAAGCCGTCTAGTTGAAGTGGATGAATCAGTTGCAAGGGGTGGCCAGAGGACTTATGTTGTCACTCCACCAGACACGTCCAACATTAATAAAGGAAAGCTCTACACATACCCAGTGTTCCCAGTTTTGAATGTTGCTCTCATGAAGCCAGAGAAGCTGTCGCTTCACGCACAGTCCATAATGACCCCACCCGTGTCCCCTGTGGCTAAGAGAACAAAAGCTGAAAGACATGAATCTGTTCTGATGGCAAAAAAGAACTCTGCAAGTCCTAGCAACTGGGCCAAGTGTTTATTAGCGCATTGTTACAGTCTATGGTTTATTCATCTGCCTGCATATGTTAAACGTCACCACAACAAAGCCAAGGTGTTACATGTGGCTTTTGAGATCTTGTGCAAGAAAAAGAAAGGAGTCAAACTTCCAGACGAGGTGTGTTACCGAGTGTTAATGCAGCTTTGTGGACAATACGGCCACCCTGCTCTTGCTGTGAAGGTTTTGTTTGAGATGAAAAACCAAGGAATAAAACCAAATGCTGTGACATACGGGTACTACAACAGGGCTGTTATGGAAGGAAAATGGCCGTCCAACACGACCAGTTCCCACATGTGGAATAAACTGAGGAATTTCTTTGCTGCTGTGTACGAGCTTCAGAGACTAGCGAAACTGGCACATAATAACAAAGAAGACTCCTTGTCCCCGTCAGGATCAGGCAGCGACTTGGATGTCACAGACTCGCCTAGAAGAATGACCTTGAAAAAACCCGACCGGTCACGCACGCCGTCACGCGAGCGCGAAAAAGCTCTGTCACACGAACGGCTGCTCGACTTGGGAGAGCCAAACGACAGTGAAGGCAGAAGTACGCCGGAGAGAGAACTCAAATTACGACGAGAAAGAACGATCAGCGAAATGTCCACCGCTTCCGAAGCGACAGATCTTCTGGACTTGTCTACTACCTCCATCGACGGTGCGGCTTTCTCGCAAAGAAAACGGGCGACTTACGGTAGAACCATTAGCGAAACGTCAGTTCTTTCAGCGGCGTTTAGTGACGGTTCGCGGCATTCTCAGCTGTATATCAATGCGAACAGCGAGGATTCTGACCCATATGAGTACACGACCAGGATGTTGGACGATGTTATTTTTGGTCTCCCTTCTGGCTTGCAGCCCGACACTGCGCTCGAAGCCGTGCTGTGCACTTGCCATCAGTGCGTGAAATGTGGGCGTTATCTGTACGATGAAGAGATCTTGGCTGGGTGGACTGCAGACGACTCTAATCTGAACACAGGATGTCCATACTGCCAAACACAGCAAGTCGCAAGTCTCACAATTAAAATCAAGGATTATCGCAACTGTTTTTCATCTCACCCGAGCTCTGAGCTATCGGCCAGTATCAACAGCTTCGGAAGCAACGAATTGTTGCCGGGAAATTCCGAAGTGGAGCCGAGCTCCGGACCGCTCAGCAACTCTGTGCCGACCACGATTGAATCCAATCTCTTGATGCAGAAGCTCACCAGTCCCCAGCGTCCACTCAGCGCCGCGATGTCTCCCCCAGCCTCCAACCCAGTCCCCATCCGGGCTAGCCATCATCGCATGCGTCATAGCATTAGTGCTCCGTCAAGTGCTAACGCCAGTCCCTCGGGGAGTCTACACGGCAGTCCGAGGCCTGGGTCGTGGATTTCGCGTGCACGTAGTAGTAACAGCACTTGCGGTAGCTACGGGAGTACTAGTTGGTATGTGTCTAGAGCCCCGGAAGAAAGGGATTTAATTACAGTGCCATATCTCAATCCTTTAGTTTTGAGAAAAGAGCTGGAGAATATGTTTGAAAATGACGGCATCACTGCACTTCAGTTTCCAGAAGTCGTGCAAGAGAAGAGCATCATCTTTTGGAACTTGGTGTGGTATTTCAAGCGGCTTGAACTTCCCTCACACTTGGCAGATCACGTGTTGTCAACGTACCCCAGCAACGAGAGAGCTGACAGATTTGAGGAACGCCGCAGCAACTCGGGGCTTGGTACCCAGGTGTTGGTATCCACGTCATGGGACAGTGAAAGGGAAGAATATGACATGGTTCCACTGTACGTCCTCTGGAATGCGCCAGCTGACCAGCAGGGTTCTCTTATGGACAAAGGACTTACAGGCAGAAATGTAATGCAGTCCGTTGTGGCTCATGTTCAAGAGAATGATGTTTACAGCCCAACTGTGATCCTACTGGAGGAAAGAAACCGGCAAAAGAACATCAACCCGAACGCAAAATGGAGTATTTATCGAGAATTGTTGTTCTTGTCACTGACTGCTTGCGGAGCTGAAAACATCGACGTTGACGCCTTCGACAAGGAATACAGACGAGCATATAAACGACTGTTCGAGTCCAAGAACTACTCAGACCTGCTATGTCCGGAAGACAGAAACCCGCCGTTACGATCTGTGTGCTGCAGGCGCGTGTTCGACCCACCTATCCTCCAACCCAGGCTTCCGCAGTACCTCGTTAACACTTTTTCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z401	C-myc promoter-binding protein OS=Homo sapiens OX=9606 GN=DENND4A PE=1 SV=2
A6H8H2	DENN domain-containing protein 4C OS=Mus musculus OX=10090 GN=Dennd4c PE=1 SV=1
Q5VZ89	DENN domain-containing protein 4C OS=Homo sapiens OX=9606 GN=DENND4C PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003081 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan
PF03455 all species →	dDENN	dDENN domain	Domain	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR023341 all species →	Domain	MABP domain	Interproscan
IPR051696 all species →	Family	DENN Domain-Containing GEFs	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296 all species →	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20163	DENND4; DENN domain-containing protein 4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.