Gene detail

Detailed information of evm.model.Ap1.673 in Astrangia poculata

Genomic Location: Ap1:6555699...6557735
NR annotation: XP_020610662.1, protein fem-1 homolog B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.673

atgatcagtttagaattttcgaaccacatcaagaccttcgactacaaaagtcaacgaagcgaaatagaacgcgaggcgatcgaaaaggtaattgcggggcaatcgctgtttcctttgttcgaaaaccaccgtttgacctttgaggaacgaaagcagcttttgaagacaaaactcggatatccacacaaaggggaagaaagcagtctttttctattggctgttgtgtgtggtcacgtggatttggccaaaaatcttattgaagagaagcttgttgacattgaagaacgaggaacagttttagttggtgtctataaagatgacaatgttaagacctgttgttttggctatgagataggcgaagacgtgacccctttgtggtgtgccgccgcatggtgtaaacttgaccttgttaagattctggtgagctatggggcgaatatcaaccacaaatcaacagttggttccagtccgatattcatggcatgtgaacacttccattcaaacagagcacgtcaagtacttctcgggaaaccggatgtgccccaccagcttgaacttgtgaagtaccttgtggaaaatggggctgacgttaaggaagctggtcgacatggcaacactcctctgatggcagcagccttgtctggatttaaggacccatcgctggtgatgtacctactagataaaggtgcagaccctaatgctaagaattcccatggttctaccgcactgcattttgccacagaaaagggatgtttgggaacggtaaaggagttagttaagcatggagctcagctagaagcagttgatgcagaggggctgacccccctgcagcgagcatgctgtggatgtcacgatgaggttgttgagtggatcatttcacaacctgattgtagtagagagcagaagattgatgcactggaacttcttggtgcatcccatgcaacacttatttacatagaagacattgagtatcccagcgaaggacagagtgaggaagaggacagtgatgatgttgataacacatctatccagcaaggataccaactaatgttgagagcaataaaagagcgttttagccctcctgcaaatattgtaaagcaaaacgtgaagccccctttggctctttacaataatcaagtggaaagtcaaggcattgaagaacttgaggcattgagtaccaacaatgaagccattcgcacggagggtttcattatcagagatagagtccttggaggtcttcactcatcagaaatcctccaaccacttttacacaaagccgtggttttagcccataagagtgaccttaagaaggcggctaccttctatagtcatgccttgtcattcaaattgatatcttctcttgaaagcagagaaatcctgagaagattccttgagcaccttgcaggcatgattgaaaccaaggcccagttgaagattgccgaacttgagccagcctatcagtttatattggcttggcttgcgcatgtggcacagaaaagagaagagcagggtgtttctcactttgaacttcaagaacgtgaatgggcttttgatcgtgatctacttctggctttttatttcatctgtatcttgtgcaatgtggatgttgacagtgatgaagaagccaagaagaagtctgacatgatcaaagatatgatggatctgaacttgcggaactcgcttggctctgacctgtttcatctagcagtctgggattcgattatcgaagttcacaacaaagtctccatcaaaggaatattcaaagtgcccaacaaaaaagtcctggaaattcttctacaatgtggagcaaacatcaactcacaggacagggcaggaaataccccccttcatgttcttgtagcagtcaactcgtcattggctatcgttccagaagatttcaaagaaaattgtggaaaggagcacatcgactggttccttcaaaatggtgcaaaattagatgtaaaaaattcagcaagagaaaagccagttgatgtggcagtgtctgaagttacaaaaggaattctgcaaaaattgtaa

Transcript

evm.model.Ap1.673

ATGATCAGTTTAGAATTTTCGAACCACATCAAGACCTTCGACTACAAAAGTCAACGAAGCGAAATAGAACGCGAGGCGATCGAAAAGGTAATTGCGGGGCAATCGCTGTTTCCTTTGTTCGAAAACCACCGTTTGACCTTTGAGGAACGAAAGCAGCTTTTGAAGACAAAACTCGGATATCCACACAAAGGGGAAGAAAGCAGTCTTTTTCTATTGGCTGTTGTGTGTGGTCACGTGGATTTGGCCAAAAATCTTATTGAAGAGAAGCTTGTTGACATTGAAGAACGAGGAACAGTTTTAGTTGGTGTCTATAAAGATGACAATGTTAAGACCTGTTGTTTTGGCTATGAGATAGGCGAAGACGTGACCCCTTTGTGGTGTGCCGCCGCATGGTGTAAACTTGACCTTGTTAAGATTCTGGTGAGCTATGGGGCGAATATCAACCACAAATCAACAGTTGGTTCCAGTCCGATATTCATGGCATGTGAACACTTCCATTCAAACAGAGCACGTCAAGTACTTCTCGGGAAACCGGATGTGCCCCACCAGCTTGAACTTGTGAAGTACCTTGTGGAAAATGGGGCTGACGTTAAGGAAGCTGGTCGACATGGCAACACTCCTCTGATGGCAGCAGCCTTGTCTGGATTTAAGGACCCATCGCTGGTGATGTACCTACTAGATAAAGGTGCAGACCCTAATGCTAAGAATTCCCATGGTTCTACCGCACTGCATTTTGCCACAGAAAAGGGATGTTTGGGAACGGTAAAGGAGTTAGTTAAGCATGGAGCTCAGCTAGAAGCAGTTGATGCAGAGGGGCTGACCCCCCTGCAGCGAGCATGCTGTGGATGTCACGATGAGGTTGTTGAGTGGATCATTTCACAACCTGATTGTAGTAGAGAGCAGAAGATTGATGCACTGGAACTTCTTGGTGCATCCCATGCAACACTTATTTACATAGAAGACATTGAGTATCCCAGCGAAGGACAGAGTGAGGAAGAGGACAGTGATGATGTTGATAACACATCTATCCAGCAAGGATACCAACTAATGTTGAGAGCAATAAAAGAGCGTTTTAGCCCTCCTGCAAATATTGTAAAGCAAAACGTGAAGCCCCCTTTGGCTCTTTACAATAATCAAGTGGAAAGTCAAGGCATTGAAGAACTTGAGGCATTGAGTACCAACAATGAAGCCATTCGCACGGAGGGTTTCATTATCAGAGATAGAGTCCTTGGAGGTCTTCACTCATCAGAAATCCTCCAACCACTTTTACACAAAGCCGTGGTTTTAGCCCATAAGAGTGACCTTAAGAAGGCGGCTACCTTCTATAGTCATGCCTTGTCATTCAAATTGATATCTTCTCTTGAAAGCAGAGAAATCCTGAGAAGATTCCTTGAGCACCTTGCAGGCATGATTGAAACCAAGGCCCAGTTGAAGATTGCCGAACTTGAGCCAGCCTATCAGTTTATATTGGCTTGGCTTGCGCATGTGGCACAGAAAAGAGAAGAGCAGGGTGTTTCTCACTTTGAACTTCAAGAACGTGAATGGGCTTTTGATCGTGATCTACTTCTGGCTTTTTATTTCATCTGTATCTTGTGCAATGTGGATGTTGACAGTGATGAAGAAGCCAAGAAGAAGTCTGACATGATCAAAGATATGATGGATCTGAACTTGCGGAACTCGCTTGGCTCTGACCTGTTTCATCTAGCAGTCTGGGATTCGATTATCGAAGTTCACAACAAAGTCTCCATCAAAGGAATATTCAAAGTGCCCAACAAAAAAGTCCTGGAAATTCTTCTACAATGTGGAGCAAACATCAACTCACAGGACAGGGCAGGAAATACCCCCCTTCATGTTCTTGTAGCAGTCAACTCGTCATTGGCTATCGTTCCAGAAGATTTCAAAGAAAATTGTGGAAAGGAGCACATCGACTGGTTCCTTCAAAATGGTGCAAAATTAGATGTAAAAAATTCAGCAAGAGAAAAGCCAGTTGATGTGGCAGTGTCTGAAGTTACAAAAGGAATTCTGCAAAAATTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZM55	Protein fem-1 homolog B OS=Gallus gallus OX=9031 GN=FEM1B PE=2 SV=1
P0C6P7	Protein fem-1 homolog B OS=Rattus norvegicus OX=10116 GN=Fem1b PE=1 SV=1
Q9UK73	Protein fem-1 homolog B OS=Homo sapiens OX=9606 GN=FEM1B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24118 all species →	POTE ANKYRIN DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.673.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.