Genomic Location: Ap1:7023730...7043135
NR annotation: KAJ7326101.1, Long-chain-fatty-acid--CoA ligase acsbg2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.729 |
| Transcript |
| evm.model.Ap1.729 |
| Protein |
| evm.model.Ap1.729 |
| UniProt accession | Description |
|---|---|
| Q7ZYC4 | Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Xenopus laevis OX=8355 GN=acsbg2 PE=2 SV=1 |
| Q5ZKR7 | Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Gallus gallus OX=9031 GN=ACSBG2 PE=2 SV=2 |
| Q2KHW5 | Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos taurus OX=9913 GN=ACSBG1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002220 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00501 all species → | AMP-binding | AMP-binding enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020845 all species → | Conserved_site | AMP-binding, conserved site | Interproscan |
| IPR000873 all species → | Domain | AMP-dependent synthetase/ligase domain | Interproscan |
| IPR042099 all species → | Homologous_superfamily | ANL, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43272 all species → | LONG-CHAIN-FATTY-ACID--COA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004467 all species → | Molecular Function | long-chain fatty acid-CoA ligase activity | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15013 | ACSBG; long-chain-fatty-acid--CoA ligase ACSBG | EC:6.2.1.3 | Lipid biosynthesis proteins | ko01004 | deepkoala |
Transcript abundance of evm.model.Ap1.729 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
