Detailed information of evm.model.Ap1.739 in Astrangia poculata

Genomic Location: Ap1:7085088...7086161
NR annotation: CAB3984634.1, uncharacterized transposon-derived [Paramuricea clavata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P20825Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000075 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00385
all species →		ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF00665
all species →		rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000953
all species →		DomainChromo/chromo shadow domainInterproscan
IPR023779
all species →		Conserved_siteChromo domain, conserved siteInterproscan
IPR023780
all species →		DomainChromo domainInterproscan
IPR001584
all species →		DomainIntegrase, catalytic coreInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR016197
all species →		Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46585
all species →		INTEGRASE CORE DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00986ltrA; RNA-directed DNA polymeraseEC:2.7.7.49
Enzymes with EC numbers-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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