Gene detail

Detailed information of evm.model.Ap1.77 in Astrangia poculata

Genomic Location: Ap1:674039...689295
NR annotation: CAH3014638.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.77

atgtatcaaagtcgccatgctacgccacaccaaccgtccggccagccttttaagttcacagtggcggattcatgcgatcgtataaaagaagaattcaactttcttcaagcccagtaccacagtttgaagttagagtgtgaaaagctagcaagcgagaagacagaaatgcaaagacattacgttatgtactacgagatgtcatacggactcaatgtggaaatgcataagcagacggaaattgcaaagaggttaaatgcaatctgtgcccagatcatacctttcctttctcaagatcaccaacaacaagttgcagcagctgtggagagagctaaacaagtgacgatgacagaattgaatgcaattattgggcaacaacagcttcaccagcaaggccttcaaggtctacacgcacacccacccacgataccactgccgcaccctggtgccactccccctcagctgccaccaggagcagcatcaggactgcttgccttgtccaccctgtcaggtcaagttcctccacatctaccaatgatgaaaccagaggacaaagatggcatgaactcgctgtcaccacttggaccaatgtcgcgatcagaaaaatacagagcatctgacttgtcgtcacatggcagtgatgacgggcacatggatagggaaagagatagagacagagagcgagaacgagagcgcgaacgagatagagatagggatcgagaaagcagagacagggaacgtgacagagaccgcgatagggatcgtgacagagatcgcgatagagaaagacatgtaaacgggacaaagagcaacagcaaacggaagagagacgataaggattcaggggaaagtgacgcagaaaagagtgacggggacttagtagttgatgtctctaatgaggacgccaattcacccagagttgagaatggacctgactcgccacctttaaatgaaaagaaagttagaaaagattccggatcgcccaccaatccctcgtcatcatcatctacaccctcgtccaaacatccaaagtctgaaagcaaagccgtactaccatcatcagaaaccggttcatcagggagaaaaagtccgtcaagatcatcaccttctgtcaaaacccctgtagctgcacctgctgtgagaacagccatgtctgtaccaggaggaccttatccatttgtcaaccctcacaacatcgccagtgaactttccagtccaacttcgttttcaccatcagttatggctgccagcatgccggccagtggaattggttatggtagatcagctctggtgggcttcgaacatggtgccccaggaacaagagtgggcatgcctccgcttggacctggtggcctcccaccagggccccctgggggcaaacctgcatactcgttttacgttagtggtgatggccaaatgcaagcggtgccgtttccaccagatgctttgattggttcaagtatcccccgacatgcaagacagataaaccaactgaaccatggagaggtggtttgcgcagttacaataagccatccaacacgacatgtctacacaggtggaaagggatgtgtcaaagtgtgggatataggtcaaagtagtggaaaaaacccaatatcgacattagagtgtttgagagataactatattcgctcttgtcgactcttgcctgatggaaggacactaatagttggcggtgaagctagcacgcttaccatatgggatctggcgtcatcacaaccaagaataaagaatgaacttacttcaaatgctccggcctgttatgcactggcaataagtcctgactctaaagtgtgtttcagttgttgtagtgatggaaatatcgctgtttgggatttacataatcaaacattagtcagacaattccaaggtcacacggatggcgcaagttgtattgatatttcacccgatggcacaaagttatggacaggtggtttagataacacagttagatcgtgggatctccgagaaggaagacaacttcagcagcacgattttacatcacagatcttctccttaggatattgtccttctggcgattggctagctgtaggaatggagaacagcaatgtggaagttcttcaccaaacaaaaccagacaagtatcaactccacttgcatgaaagttgtgtgctgtcactaaagtttgcatactctggcaagtggttcattacaacaggcaaagataacttgctgaatgcatggagaacaccctatggagccagcattttccagtccaaggagtcctcatccgtattgagctgtgatatttcaaccgatgacaaatacatcgtcacagggtcgggtgataagaaagccaccctctatgagatcagagtggattgcaaaaccaacaaattctgcatcagaatgggactgaatttcaatccagtgtgtgtgaagttgtcagatatcactcgaagaaaacttggtgtatga

Transcript

evm.model.Ap1.77

ATGTATCAAAGTCGCCATGCTACGCCACACCAACCGTCCGGCCAGCCTTTTAAGTTCACAGTGGCGGATTCATGCGATCGTATAAAAGAAGAATTCAACTTTCTTCAAGCCCAGTACCACAGTTTGAAGTTAGAGTGTGAAAAGCTAGCAAGCGAGAAGACAGAAATGCAAAGACATTACGTTATGTACTACGAGATGTCATACGGACTCAATGTGGAAATGCATAAGCAGACGGAAATTGCAAAGAGGTTAAATGCAATCTGTGCCCAGATCATACCTTTCCTTTCTCAAGATCACCAACAACAAGTTGCAGCAGCTGTGGAGAGAGCTAAACAAGTGACGATGACAGAATTGAATGCAATTATTGGGCAACAACAGCTTCACCAGCAAGGCCTTCAAGGTCTACACGCACACCCACCCACGATACCACTGCCGCACCCTGGTGCCACTCCCCCTCAGCTGCCACCAGGAGCAGCATCAGGACTGCTTGCCTTGTCCACCCTGTCAGGTCAAGTTCCTCCACATCTACCAATGATGAAACCAGAGGACAAAGATGGCATGAACTCGCTGTCACCACTTGGACCAATGTCGCGATCAGAAAAATACAGAGCATCTGACTTGTCGTCACATGGCAGTGATGACGGGCACATGGATAGGGAAAGAGATAGAGACAGAGAGCGAGAACGAGAGCGCGAACGAGATAGAGATAGGGATCGAGAAAGCAGAGACAGGGAACGTGACAGAGACCGCGATAGGGATCGTGACAGAGATCGCGATAGAGAAAGACATGTAAACGGGACAAAGAGCAACAGCAAACGGAAGAGAGACGATAAGGATTCAGGGGAAAGTGACGCAGAAAAGAGTGACGGGGACTTAGTAGTTGATGTCTCTAATGAGGACGCCAATTCACCCAGAGTTGAGAATGGACCTGACTCGCCACCTTTAAATGAAAAGAAAGTTAGAAAAGATTCCGGATCGCCCACCAATCCCTCGTCATCATCATCTACACCCTCGTCCAAACATCCAAAGTCTGAAAGCAAAGCCGTACTACCATCATCAGAAACCGGTTCATCAGGGAGAAAAAGTCCGTCAAGATCATCACCTTCTGTCAAAACCCCTGTAGCTGCACCTGCTGTGAGAACAGCCATGTCTGTACCAGGAGGACCTTATCCATTTGTCAACCCTCACAACATCGCCAGTGAACTTTCCAGTCCAACTTCGTTTTCACCATCAGTTATGGCTGCCAGCATGCCGGCCAGTGGAATTGGTTATGGTAGATCAGCTCTGGTGGGCTTCGAACATGGTGCCCCAGGAACAAGAGTGGGCATGCCTCCGCTTGGACCTGGTGGCCTCCCACCAGGGCCCCCTGGGGGCAAACCTGCATACTCGTTTTACGTTAGTGGTGATGGCCAAATGCAAGCGGTGCCGTTTCCACCAGATGCTTTGATTGGTTCAAGTATCCCCCGACATGCAAGACAGATAAACCAACTGAACCATGGAGAGGTGGTTTGCGCAGTTACAATAAGCCATCCAACACGACATGTCTACACAGGTGGAAAGGGATGTGTCAAAGTGTGGGATATAGGTCAAAGTAGTGGAAAAAACCCAATATCGACATTAGAGTGTTTGAGAGATAACTATATTCGCTCTTGTCGACTCTTGCCTGATGGAAGGACACTAATAGTTGGCGGTGAAGCTAGCACGCTTACCATATGGGATCTGGCGTCATCACAACCAAGAATAAAGAATGAACTTACTTCAAATGCTCCGGCCTGTTATGCACTGGCAATAAGTCCTGACTCTAAAGTGTGTTTCAGTTGTTGTAGTGATGGAAATATCGCTGTTTGGGATTTACATAATCAAACATTAGTCAGACAATTCCAAGGTCACACGGATGGCGCAAGTTGTATTGATATTTCACCCGATGGCACAAAGTTATGGACAGGTGGTTTAGATAACACAGTTAGATCGTGGGATCTCCGAGAAGGAAGACAACTTCAGCAGCACGATTTTACATCACAGATCTTCTCCTTAGGATATTGTCCTTCTGGCGATTGGCTAGCTGTAGGAATGGAGAACAGCAATGTGGAAGTTCTTCACCAAACAAAACCAGACAAGTATCAACTCCACTTGCATGAAAGTTGTGTGCTGTCACTAAAGTTTGCATACTCTGGCAAGTGGTTCATTACAACAGGCAAAGATAACTTGCTGAATGCATGGAGAACACCCTATGGAGCCAGCATTTTCCAGTCCAAGGAGTCCTCATCCGTATTGAGCTGTGATATTTCAACCGATGACAAATACATCGTCACAGGGTCGGGTGATAAGAAAGCCACCCTCTATGAGATCAGAGTGGATTGCAAAACCAACAAATTCTGCATCAGAATGGGACTGAATTTCAATCCAGTGTGTGTGAAGTTGTCAGATATCACTCGAAGAAAACTTGGTGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62441	Transducin-like enhancer protein 4 OS=Mus musculus OX=10090 GN=Tle4 PE=1 SV=4
Q9JIT3	Transducin-like enhancer protein 3 OS=Rattus norvegicus OX=10116 GN=Tle3 PE=1 SV=1
O42478	Transducin-like enhancer protein 4 OS=Xenopus laevis OX=8355 GN=tle4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003469 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03920 all species →	TLE_N	Groucho/TLE N-terminal Q-rich domain	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009146 all species →	Family	Groucho/transducin-like enhancer	Interproscan
IPR005617 all species →	Domain	Groucho/TLE, N-terminal Q-rich domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10814 all species →	TRANSDUCIN-LIKE ENHANCER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04497	GRO, TLE; groucho	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.