Gene detail

Detailed information of evm.model.Ap1.851 in Astrangia poculata

Genomic Location: Ap1:8129676...8144189
NR annotation: XP_020610678.1, N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.851

atggatattgtaaaagaagttgaaagcgctttagaagaggagggctatgtaaaaatcgactctactacaccaagcacgatgtccaccgttacagctccagtttcttctaccgacaaaacaccaagtttatcagccctgacttcagttcattcgcagtttacagatcgaatatcaagccctgttcaacagaaaataaggccggacgtttcttcttcttccgatctttcagaaaatgcttcacttagttctgttaatgtttcgtcgagttcctcatcaacgtggcaaagacagaattctggtcaagatcgcgaggatgaacaaagtggtagtggagtttggggctggatgtctagtgcagtcacggctggcttacaaactacgcaaaacataggtagaaatatcgtcgagaaaaccaagacttctgttgaaagtgtgatcacaacacttgacccagaaatggaggattatatgtatggaagggatcagtctataagcttagcagtgacaaccaatgatgtagaagccattgaagcaataaaagatggtttccttcaagtgtttgaacatgtcgtggtacaaccacattcctctgcatcaggcattgcccccttgcctgtggggttctcggcaggtgtgaagggtgcacagcacagaatagcgaacctagtgcgaggaaaaaaggtgcaagaggggcaggtgatcatcggagttgaggaaatgttgtcagagctgctgcctggaaagtggtttggcttgacatgtcttgcactgaatgacccaacgtcaaagttagagcttgaaacattctctcaatcaattcatattcctaaagtgtacatcaccaaagcagaggaaagcacgccgtccaattataacctgaggtggtcaggtttgtcatttactcttggagaagtcattataggatctggacaggcacatggtgattggcattcaataatttcaggttcttccaaacggcaaattcttactctagcagcaaggacgttagcaggacaattcagagacaggttactgatcatgaatgtgagaaggtttctgttttgcattcgatttcgcggaataaagaatcgaatactttcatgtttattgattctctccgttcttctaaccttctggttggtgcaacaagagttcgaaaaaacacaacgagatgaaccaagggataaactaccacgggatgatcaaccggttggaagttgggaagaatgcgtgacactgatacagggaaatccatcaataaaatcgagtcacgcaccttcgcgcagtgacgataacctcattctccaaacttatacttccagagattgccactttataaggcaagagcgttttcgtcaccctctcccttccgatacagaactcgactttccaattgccttcgcgatttctgtctataagtcggctcaacttttggaaaagcttttacaagccatttacatgcctcaaaacatttactgcattcacgtcgacttgaaatctcccgaaacatttcgttcagcggtcaccgaaatgattcggtgtctaccaaatgtatttttgacggagaagcgcgtcgatgttatatatccgcatataagtatcttgaccgcgcagttcaactgtatggaggacttgatcaagtctggcaaagactggaagtatttaattaatgttgtgggacaagatttccctctttataataatcgtgagctagtcgacgccttacgcagtcttaatggcaagaacaacatccaaagcttctatcatccagaattaaaacgtcgtactgagtatgcatacgagttcaagcgacaaactgaaggatcagaccatggagcttacagatattacaaaactacaagaaagaaatcaccaccaccgttcggcattgaactttacaaaggcgcaaaccacgtggcattgacgaaggcatttgttgaatatattcttttcaataagaccgcccgcgcctttatcgagtggctttcagacaccaaaagcccaccagaaacattttactcttctttgcagcagtacccaggggtccctggtggtatagttggagagcaaccgcagttcataatgcgcgctataaactggttcgaagaagtaaaagtaaacttcgtgtgtcatggagaatggacaatttactgcgatgtttatcaatggcgcgacaacggagaagttacggagaatactttttcccttgaatctaattcgtggaatgatcagtgcattgtcgttccagatccctggacgtttttggtccagtgttggtcaagagtcaagataagcaaggctgacactacgtag

Transcript

evm.model.Ap1.851

ATGGATATTGTAAAAGAAGTTGAAAGCGCTTTAGAAGAGGAGGGCTATGTAAAAATCGACTCTACTACACCAAGCACGATGTCCACCGTTACAGCTCCAGTTTCTTCTACCGACAAAACACCAAGTTTATCAGCCCTGACTTCAGTTCATTCGCAGTTTACAGATCGAATATCAAGCCCTGTTCAACAGAAAATAAGGCCGGACGTTTCTTCTTCTTCCGATCTTTCAGAAAATGCTTCACTTAGTTCTGTTAATGTTTCGTCGAGTTCCTCATCAACGTGGCAAAGACAGAATTCTGGTCAAGATCGCGAGGATGAACAAAGTGGTAGTGGAGTTTGGGGCTGGATGTCTAGTGCAGTCACGGCTGGCTTACAAACTACGCAAAACATAGGTAGAAATATCGTCGAGAAAACCAAGACTTCTGTTGAAAGTGTGATCACAACACTTGACCCAGAAATGGAGGATTATATGTATGGAAGGGATCAGTCTATAAGCTTAGCAGTGACAACCAATGATGTAGAAGCCATTGAAGCAATAAAAGATGGTTTCCTTCAAGTGTTTGAACATGTCGTGGTACAACCACATTCCTCTGCATCAGGCATTGCCCCCTTGCCTGTGGGGTTCTCGGCAGGTGTGAAGGGTGCACAGCACAGAATAGCGAACCTAGTGCGAGGAAAAAAGGTGCAAGAGGGGCAGGTGATCATCGGAGTTGAGGAAATGTTGTCAGAGCTGCTGCCTGGAAAGTGGTTTGGCTTGACATGTCTTGCACTGAATGACCCAACGTCAAAGTTAGAGCTTGAAACATTCTCTCAATCAATTCATATTCCTAAAGTGTACATCACCAAAGCAGAGGAAAGCACGCCGTCCAATTATAACCTGAGGTGGTCAGGTTTGTCATTTACTCTTGGAGAAGTCATTATAGGATCTGGACAGGCACATGGTGATTGGCATTCAATAATTTCAGGTTCTTCCAAACGGCAAATTCTTACTCTAGCAGCAAGGACGTTAGCAGGACAATTCAGAGACAGGTTACTGATCATGAATGTGAGAAGGTTTCTGTTTTGCATTCGATTTCGCGGAATAAAGAATCGAATACTTTCATGTTTATTGATTCTCTCCGTTCTTCTAACCTTCTGGTTGGTGCAACAAGAGTTCGAAAAAACACAACGAGATGAACCAAGGGATAAACTACCACGGGATGATCAACCGGTTGGAAGTTGGGAAGAATGCGTGACACTGATACAGGGAAATCCATCAATAAAATCGAGTCACGCACCTTCGCGCAGTGACGATAACCTCATTCTCCAAACTTATACTTCCAGAGATTGCCACTTTATAAGGCAAGAGCGTTTTCGTCACCCTCTCCCTTCCGATACAGAACTCGACTTTCCAATTGCCTTCGCGATTTCTGTCTATAAGTCGGCTCAACTTTTGGAAAAGCTTTTACAAGCCATTTACATGCCTCAAAACATTTACTGCATTCACGTCGACTTGAAATCTCCCGAAACATTTCGTTCAGCGGTCACCGAAATGATTCGGTGTCTACCAAATGTATTTTTGACGGAGAAGCGCGTCGATGTTATATATCCGCATATAAGTATCTTGACCGCGCAGTTCAACTGTATGGAGGACTTGATCAAGTCTGGCAAAGACTGGAAGTATTTAATTAATGTTGTGGGACAAGATTTCCCTCTTTATAATAATCGTGAGCTAGTCGACGCCTTACGCAGTCTTAATGGCAAGAACAACATCCAAAGCTTCTATCATCCAGAATTAAAACGTCGTACTGAGTATGCATACGAGTTCAAGCGACAAACTGAAGGATCAGACCATGGAGCTTACAGATATTACAAAACTACAAGAAAGAAATCACCACCACCGTTCGGCATTGAACTTTACAAAGGCGCAAACCACGTGGCATTGACGAAGGCATTTGTTGAATATATTCTTTTCAATAAGACCGCCCGCGCCTTTATCGAGTGGCTTTCAGACACCAAAAGCCCACCAGAAACATTTTACTCTTCTTTGCAGCAGTACCCAGGGGTCCCTGGTGGTATAGTTGGAGAGCAACCGCAGTTCATAATGCGCGCTATAAACTGGTTCGAAGAAGTAAAAGTAAACTTCGTGTGTCATGGAGAATGGACAATTTACTGCGATGTTTATCAATGGCGCGACAACGGAGAAGTTACGGAGAATACTTTTTCCCTTGAATCTAATTCGTGGAATGATCAGTGCATTGTCGTTCCAGATCCCTGGACGTTTTTGGTCCAGTGTTGGTCAAGAGTCAAGATAAGCAAGGCTGACACTACGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q866Z5	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 OS=Bos mutus grunniens OX=30521 GN=GCNT3 PE=3 SV=1
Q7YQE1	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 OS=Bos taurus OX=9913 GN=GCNT3 PE=1 SV=1
Q866Z4	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 OS=Syncerus caffer OX=9970 GN=GCNT3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007422 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02485 all species →	Branch	Core-2/I-Branching enzyme	Family	Interproscan
PF01931 all species →	NTPase_I-T	Protein of unknown function DUF84	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003406 all species →	Family	Glycosyl transferase, family 14	Interproscan
IPR029001 all species →	Homologous_superfamily	Inosine triphosphate pyrophosphatase-like	Interproscan
IPR026533 all species →	Domain	Non-canonical purine NTP phosphatase/PRRC1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19297 all species →	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.851.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.