Gene detail

Detailed information of evm.model.Ap1.88 in Astrangia poculata

Genomic Location: Ap1:739192...742398
NR annotation: KAJ7339633.1, hypothetical protein OS493_006039 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64267	DNA repair protein complementing XP-A cells homolog OS=Mus musculus OX=10090 GN=Xpa PE=1 SV=2
P27088	DNA repair protein complementing XP-A cells homolog OS=Xenopus laevis OX=8355 GN=xpa PE=2 SV=1
P27089	DNA repair protein complementing XP-A cells homolog OS=Gallus gallus OX=9031 GN=XPA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005117 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01286 all species →	XPA_N	XPA protein N-terminal	Domain	Interproscan
PF05181 all species →	XPA_C	XPA protein C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000465 all species →	Family	XPA/RAD14	Interproscan
IPR009061 all species →	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR037129 all species →	Homologous_superfamily	XPA domain superfamily	Interproscan
IPR022652 all species →	Conserved_site	Zinc finger, XPA-type, conserved site	Interproscan
IPR022656 all species →	Domain	XPA, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10142 all species →	DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000110 all species →	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000715 all species →	Biological Process	nucleotide-excision repair, DNA damage recognition	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0033683 all species →	Biological Process	obsolete nucleotide-excision repair, DNA incision	Interproscan
GO:0070914 all species →	Biological Process	UV-damage excision repair	Interproscan
GO:1901255 all species →	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10847	XPA; DNA-repair protein complementing XP-A cells	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.