Detailed information of evm.model.Ap1.95 in Astrangia poculata

Genomic Location: Ap1:776408...800236
NR annotation: XP_020621189.1, elongator complex protein 1-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O95163Elongator complex protein 1 OS=Homo sapiens OX=9606 GN=ELP1 PE=1 SV=3
Q8WND5Elongator complex protein 1 OS=Oryctolagus cuniculus OX=9986 GN=ELP1 PE=2 SV=1
Q8VHU4Elongator complex protein 1 OS=Rattus norvegicus OX=10116 GN=Elp1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003224 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04762
all species →		IKI3IKI3 familyRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006849
all species →		FamilyElongator complex protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12747
all species →		ELONGATOR COMPLEX PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0002098
all species →		Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0002926
all species →		Biological ProcesstRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0033588
all species →		Cellular Componentelongator holoenzyme complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11373ELP1, IKI3, IKBKAP; elongator complex protein 1-Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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