Gene detail

Detailed information of evm.model.Ap10.1021 in Astrangia poculata

Genomic Location: Ap10:10800658...10850781
NR annotation: XP_020622225.1, LOW QUALITY PROTEIN: uncharacterized protein LOC110059840 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1021

atgttttccttttttcagggaagtattcgacgatcactagctgtcagtggtgatgtagcgcttgggggcgaatattgctggagcgaagacagcgaaggaagttgttacacgaccgataattcggttaatctacgatcagactggaatagcccgaaactaaacttgaaaactggatctggtatagatatcgcagtgacacccacgctttcagtgaaagtgccagtgatgcctaaaaggttcagaaaagcagagaaggcaccttccctcaatgcattcgataagttagctgataaagttgctgatttcgtggaactttctttgtcactgtttataagtgcaccactaaaagcagaaatatcagtgatctatccttccagtcagtgccaaggaaaagcacccgctgaacttgaaggcttttatggggtttctgacctatttgttggtctttcggttagatttctaaaacaccagttaggattgtcatttgatactggattttctcgcaaaaaatggttcagggattgtgtttgtccactttccgattctaagatatgtgttggaccagctgccccaagaccaccaaggccaagacctccagaagagaaaactccgaaacctcctgacaaaaaacaacagaggaaaaagaggggaaatggttgcggtgctccgggatccctatgcggaatagagcctgcctgtgctgggaggagaatgggacctaactgtacgatacctgatatgcggccatatcaaaactgctctgggaatggacagcctgttatagctccgcactgtgaggcagaatgtaggtgttttggaggatgggagggtgaatactgtgaaagaatatctgctaatggcggaggtgaccctcacctggagactttagatggggtagatttcgactttttcggtattggagaattctggggctgtaaaagtgtccataatgactttggtcttcagtttcgcttttattattacgagcgagcctcgctaattggaggagttgcgctgaaggctggacggagcatagtgacagttatgacgatcaaaactgaaaacgctcaagatactcccatcgtcagagtcgatggaatgttgttaaatataaccagcaactcttcaaaaccaatcgatatcaacaatggcacagttttgttagatcgtcagaggcgtttttcttttgaagctgaagagaacagtgtcgcgctaatttcactgcagtacgattcaggtgtcacagtaaccattgatgttcgtcatagccgcgtgatgaagaggcaatacttgaatgttctttattcaccaactgccgcatacaaaggtcatactgagggactatgtggctttatggacaacaatgcaacaaatgacttcatgggaccaaatggcattctttacaatgatgcagtaaagtttgccgaatcatggagaattaaggattgtcacaatggatcaggcacatttgattcttggtcttggaactcatcaaacttttatcatgaagacataatggacctgacgtatacagatccatcctatcttcctatttactcactggacggaatttcacagtctctgctagaggtcgcaacaagcatgtgcaagtccctgaatatttctgataacgatttgcacagttgtatctttgatgtcgctataactaacgatacaacatttactgatcaagaaaacttcaaacgagactgtccagctcaatgttcaggaaaaggcaggtgtgtcaatgaaacatgtagatgcatcgagggatgggctggagatagttgcgataaaggctcttgtctaaactgttccactgttcatggacaatgcgttaaaggattctgtgtgtgcgacttaggctgggaaggacgaagctgcgagactaaagcaacgtgctacagcgttaacaactgtacaaaccctgctcacggtttgtgtaagacggccgacatttgtcagtgtaatcctggatacataggtcgtgactgcagtgtggttccaacatgttttaatgtatcaaactgtactggcaatggactgtgcgtggattataatgtttgcaagtgcaatgtaggttggactggaaccaactgtacacagtactcatgtgaacgcttggattattgctcagaacatggacgctgcgtggctcttgacgaatgtgcttgtgattatggctgggccggagcaagctgctctctccctgactgtgcagctgtcaatcagtgttccgggaaaggagagtgtgttgctagcaacttgtgccgttgttatacggggtttcaagggacaaactgcagtgaagtggccgactgtagcgaatttgcaaactgtagcggacatggtgtttgtgtttccaaggagttactgaatgtgtcgtgcagttgtttcactggtttcactggagctaactgcagtcaacctacatgtacaactgtgaggaattgttccgatcacggtgcatgcatagaagcggagctctgtaaatgtgacatgggctacaatggcacagactgcagcaacttctcatgtgaagctgtcaactcatgttctgggcacggagaatgcgttggatacgacgtctgtcactgcaatacttcctggtcaagtccagcatgcagcattccagattgcagtgctgttaagaactgctctaatcaaggagactgtgttctaccagacacttgtgcgtgttacccagcttatgacggtaaatactgtgatcaaaaggcaaaacccaacatcaatgcacctagctttgagcaactcttttataacgcaaccatcgtggaaaactctccaataggaacaatgattctgcacgtacatgccaacgataccgattcgggaagaaacggtcaggtattttatgccgtagttggtgacagagacattgaaaatacacttgccattggcgggacatctggaaaaatttacagcacattaatgctagattttgagtccatcgaagtggcgtctttcaacgtaaccattgtagccttcgatgatggatttccacagaaatcgggattcgccatcgcacagatagcagtggtggatgaaaatgacaactgtccaacgtttactgaaccatctgcgaatctacagcttgagttctcggtgctaaatccaggagacatcgtcaccaaagtttcagccattgatttggacagtggaataaacagcgatataacttataacatatccaaaaacagtgcgttttccattgatccaaaaactggtgttatcactgtcgcctcaaatttaacaaacacagtatatcaactcacagtcagcgctagtgataatggagtcgtttcctgcacgacggagacaagtttgactattagaactaccagcttgcctacaaagatcccatggacatcatccaccagttcttccacagagaagataaccgaaacttctccgcatcatacagagagtacatctagatcttctgagtttacataccccacaggcaaagacaagagtacaacacctagcgagtcttctcgtttaccaaccggagtaacagcagttccacaaaaggattcaaactatgtcgtcatcggtgcctctgctggtggaggagtactggtgcttattatcgcaatactgataataagaaagtgtctttgtaaagccaggacctcttcagccaagcaaacggaaaatactggaaaagtcaatgactgccttgaaggtgattttgagttatctaccatgctccaaaaaatatga

Transcript

evm.model.Ap10.1021

ATGTTTTCCTTTTTTCAGGGAAGTATTCGACGATCACTAGCTGTCAGTGGTGATGTAGCGCTTGGGGGCGAATATTGCTGGAGCGAAGACAGCGAAGGAAGTTGTTACACGACCGATAATTCGGTTAATCTACGATCAGACTGGAATAGCCCGAAACTAAACTTGAAAACTGGATCTGGTATAGATATCGCAGTGACACCCACGCTTTCAGTGAAAGTGCCAGTGATGCCTAAAAGGTTCAGAAAAGCAGAGAAGGCACCTTCCCTCAATGCATTCGATAAGTTAGCTGATAAAGTTGCTGATTTCGTGGAACTTTCTTTGTCACTGTTTATAAGTGCACCACTAAAAGCAGAAATATCAGTGATCTATCCTTCCAGTCAGTGCCAAGGAAAAGCACCCGCTGAACTTGAAGGCTTTTATGGGGTTTCTGACCTATTTGTTGGTCTTTCGGTTAGATTTCTAAAACACCAGTTAGGATTGTCATTTGATACTGGATTTTCTCGCAAAAAATGGTTCAGGGATTGTGTTTGTCCACTTTCCGATTCTAAGATATGTGTTGGACCAGCTGCCCCAAGACCACCAAGGCCAAGACCTCCAGAAGAGAAAACTCCGAAACCTCCTGACAAAAAACAACAGAGGAAAAAGAGGGGAAATGGTTGCGGTGCTCCGGGATCCCTATGCGGAATAGAGCCTGCCTGTGCTGGGAGGAGAATGGGACCTAACTGTACGATACCTGATATGCGGCCATATCAAAACTGCTCTGGGAATGGACAGCCTGTTATAGCTCCGCACTGTGAGGCAGAATGTAGGTGTTTTGGAGGATGGGAGGGTGAATACTGTGAAAGAATATCTGCTAATGGCGGAGGTGACCCTCACCTGGAGACTTTAGATGGGGTAGATTTCGACTTTTTCGGTATTGGAGAATTCTGGGGCTGTAAAAGTGTCCATAATGACTTTGGTCTTCAGTTTCGCTTTTATTATTACGAGCGAGCCTCGCTAATTGGAGGAGTTGCGCTGAAGGCTGGACGGAGCATAGTGACAGTTATGACGATCAAAACTGAAAACGCTCAAGATACTCCCATCGTCAGAGTCGATGGAATGTTGTTAAATATAACCAGCAACTCTTCAAAACCAATCGATATCAACAATGGCACAGTTTTGTTAGATCGTCAGAGGCGTTTTTCTTTTGAAGCTGAAGAGAACAGTGTCGCGCTAATTTCACTGCAGTACGATTCAGGTGTCACAGTAACCATTGATGTTCGTCATAGCCGCGTGATGAAGAGGCAATACTTGAATGTTCTTTATTCACCAACTGCCGCATACAAAGGTCATACTGAGGGACTATGTGGCTTTATGGACAACAATGCAACAAATGACTTCATGGGACCAAATGGCATTCTTTACAATGATGCAGTAAAGTTTGCCGAATCATGGAGAATTAAGGATTGTCACAATGGATCAGGCACATTTGATTCTTGGTCTTGGAACTCATCAAACTTTTATCATGAAGACATAATGGACCTGACGTATACAGATCCATCCTATCTTCCTATTTACTCACTGGACGGAATTTCACAGTCTCTGCTAGAGGTCGCAACAAGCATGTGCAAGTCCCTGAATATTTCTGATAACGATTTGCACAGTTGTATCTTTGATGTCGCTATAACTAACGATACAACATTTACTGATCAAGAAAACTTCAAACGAGACTGTCCAGCTCAATGTTCAGGAAAAGGCAGGTGTGTCAATGAAACATGTAGATGCATCGAGGGATGGGCTGGAGATAGTTGCGATAAAGGCTCTTGTCTAAACTGTTCCACTGTTCATGGACAATGCGTTAAAGGATTCTGTGTGTGCGACTTAGGCTGGGAAGGACGAAGCTGCGAGACTAAAGCAACGTGCTACAGCGTTAACAACTGTACAAACCCTGCTCACGGTTTGTGTAAGACGGCCGACATTTGTCAGTGTAATCCTGGATACATAGGTCGTGACTGCAGTGTGGTTCCAACATGTTTTAATGTATCAAACTGTACTGGCAATGGACTGTGCGTGGATTATAATGTTTGCAAGTGCAATGTAGGTTGGACTGGAACCAACTGTACACAGTACTCATGTGAACGCTTGGATTATTGCTCAGAACATGGACGCTGCGTGGCTCTTGACGAATGTGCTTGTGATTATGGCTGGGCCGGAGCAAGCTGCTCTCTCCCTGACTGTGCAGCTGTCAATCAGTGTTCCGGGAAAGGAGAGTGTGTTGCTAGCAACTTGTGCCGTTGTTATACGGGGTTTCAAGGGACAAACTGCAGTGAAGTGGCCGACTGTAGCGAATTTGCAAACTGTAGCGGACATGGTGTTTGTGTTTCCAAGGAGTTACTGAATGTGTCGTGCAGTTGTTTCACTGGTTTCACTGGAGCTAACTGCAGTCAACCTACATGTACAACTGTGAGGAATTGTTCCGATCACGGTGCATGCATAGAAGCGGAGCTCTGTAAATGTGACATGGGCTACAATGGCACAGACTGCAGCAACTTCTCATGTGAAGCTGTCAACTCATGTTCTGGGCACGGAGAATGCGTTGGATACGACGTCTGTCACTGCAATACTTCCTGGTCAAGTCCAGCATGCAGCATTCCAGATTGCAGTGCTGTTAAGAACTGCTCTAATCAAGGAGACTGTGTTCTACCAGACACTTGTGCGTGTTACCCAGCTTATGACGGTAAATACTGTGATCAAAAGGCAAAACCCAACATCAATGCACCTAGCTTTGAGCAACTCTTTTATAACGCAACCATCGTGGAAAACTCTCCAATAGGAACAATGATTCTGCACGTACATGCCAACGATACCGATTCGGGAAGAAACGGTCAGGTATTTTATGCCGTAGTTGGTGACAGAGACATTGAAAATACACTTGCCATTGGCGGGACATCTGGAAAAATTTACAGCACATTAATGCTAGATTTTGAGTCCATCGAAGTGGCGTCTTTCAACGTAACCATTGTAGCCTTCGATGATGGATTTCCACAGAAATCGGGATTCGCCATCGCACAGATAGCAGTGGTGGATGAAAATGACAACTGTCCAACGTTTACTGAACCATCTGCGAATCTACAGCTTGAGTTCTCGGTGCTAAATCCAGGAGACATCGTCACCAAAGTTTCAGCCATTGATTTGGACAGTGGAATAAACAGCGATATAACTTATAACATATCCAAAAACAGTGCGTTTTCCATTGATCCAAAAACTGGTGTTATCACTGTCGCCTCAAATTTAACAAACACAGTATATCAACTCACAGTCAGCGCTAGTGATAATGGAGTCGTTTCCTGCACGACGGAGACAAGTTTGACTATTAGAACTACCAGCTTGCCTACAAAGATCCCATGGACATCATCCACCAGTTCTTCCACAGAGAAGATAACCGAAACTTCTCCGCATCATACAGAGAGTACATCTAGATCTTCTGAGTTTACATACCCCACAGGCAAAGACAAGAGTACAACACCTAGCGAGTCTTCTCGTTTACCAACCGGAGTAACAGCAGTTCCACAAAAGGATTCAAACTATGTCGTCATCGGTGCCTCTGCTGGTGGAGGAGTACTGGTGCTTATTATCGCAATACTGATAATAAGAAAGTGTCTTTGTAAAGCCAGGACCTCTTCAGCCAAGCAAACGGAAAATACTGGAAAAGTCAATGACTGCCTTGAAGGTGATTTTGAGTTATCTACCATGCTCCAAAAAATATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5G1	Protocadherin gamma-B3 OS=Homo sapiens OX=9606 GN=PCDHGB3 PE=1 SV=4
Q5DRA9	Protocadherin gamma-B2 OS=Pan troglodytes OX=9598 GN=PCDHGB2 PE=3 SV=1
Q5DRA8	Protocadherin gamma-B4 OS=Pan troglodytes OX=9598 GN=PCDHGB4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000535 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR051830 all species →	Family	Neurogenic locus notch homolog	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1021.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.