Gene detail

Detailed information of evm.model.Ap10.1023 in Astrangia poculata

Genomic Location: Ap10:10870472...10890482
NR annotation: XP_020622225.1, LOW QUALITY PROTEIN: uncharacterized protein LOC110059840 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1023

atggcttctgtttgtctagagccctgtcaggtgtcttatcagctgaagattctgacgacagctcttttctctgttgctatgttgaagaagtcaatcagcaaggtccagtggctgtctttgttcatgctgtttgttggtgtctctgtcgttcagctacagcctgttgatggtcctgtgccacagagtcccgaggagagcctcccaacacagaaaactttgtcacaaacccagaatccttggttgggtcttgctgctgttgtagcctcgagtatttgctcgggatttgcagtactttccctggcagatcaaatgaaaagtaatttgaagtgggtttatctacgatcagactggaatagcccgaaaccaaaattgaaggctggagctagtatagatatcacagtgacacccacgctttctgtgaaactgccagcgatgccaaataggttcggaaaggcagtgaaggcaccttcacttaatatactggataagctagttgtggaagttgctgatatcttggacctttctttgtcactgtctgtaagtgcaccactaaaatcaggaatatcactagtctatccttccagtcagtgccaaggaaaagcacccgctgaacttgcaggctattatggggtttctgacgtggtttttggtctttcggttggatttcttggtaaacatttaggattgtcattgaatactggattttctctaataagacggaccagagattgtgtctgtccacttttcaatgctaagatatgtgttggacctaccccaagaccaccaaggccaagacctccaatagagaaaactccgaaacctcctgacaaagaagaacagaggaaaaagagagcaattggttgttccggtcagggtaaggttccaggacctccatgcggaatagagcctgcctgtgctgcaaggagaatgggacctaactgtacgatgcctgatatgcggccctttcaaaactgctctgggaatggagagcctgttatagccccgctctgtggggcggtatgttggtgtttcggaggatgggagggagaatattgtgaaagaatatctgcaaatggcggaggtgaccctcacctgcaaactttagatggggtagatttcgactttttcggtattggagaattctggggttgtaaaagtgtccataatgactttggtcttcagtttcgcttttattattacgaacgagcctcgctaattggaggagttgcgctgaaggctggacggagcatagtgacagttatgacgatcaagactgaaaacgctcaagatactcccatcgtcagagtcgatggaatgttgttaaatgttaccagcaactcttcaaaacctatcgatatcaacaatggcacagttttgttagatcgtcagaggcgttttacttttgaagcggaagagaacagtgtcgcgctaatttcactgcagtacgattcaggcgagtatgcaacatgtgtcacaataaccattgatgttcgacatagccgagtgatgaaaaggcaatacttgaatgttctgtattcacccactgctgcatacaaaggtcatactgagggactgtgtggcttaatggacaacaatgcaacaaatgacttcatgggaccagatagcattctttacaaggacgcagtacaatttgcagaatcatggagaattaaagattgccaagatggatcaggcacatttgattcttggtcttggaactcatcgaacttttaccatgaagacataatggacctgacgtatacagatccatcctatcttcctacttactcactggacggaatttcacagtctctgcttgagatcgcaacaagtatgtgcaaatccctgaatatttctgataacgatttgcacagctgtatctttgatgtcgctataactaacgacacaacttttactgatcaagaaaacttcaaacgagactgtcctgctcaatgttcaggtaaaggcaggtgtgtcaacggaacatgtaaatgcatcgagggatgggctggagatagttgtgataaaggttcttgtctaaactgttccactgttcatggacaatgcgtcaagggattctgtgtatgcgacttaggttgggaaggacgaagctgcgagactaaagctacgtgccacagcgtgaacaactgtacgagtcctgtccacggtttgtgtaagaccaccgacatttgtcattgcaaccctggatacataggtcgtgactgcagcgtggtcccaacatgttttaatttatcaaactgtactgccaatggactttgcgtggattatgatgtttgcaagtgcaatgtaggttggactggaaccaactgtacacagtactcatgtgaacgcttggattattgctcagagcatgggcgttgtgtggcccttgacgaatgtgcttgtgattatggctggaccggagcaagctgcgctctccctgactgtgcagctgtcaatcagtgctccgagaaaggagagtgtgttgccagcaacttgtgccgttgttatacggggtttctagggacaaactgcagtgaggtggccgactgtagtgagtttgcaaactgtagcgggcatggtgtttgtgttttaacgaagttgctgaatatgtcgtgcagttgtttcactggtttcagtggagctaactgcagtcaacctacatgtacaactgtgaggaattgttccgatcacggtgcatgcatagaagcggagctctgtaaatgtgacatgggctacaatggcacagactgcagcaacttctcatgtgaagctgtcaattcatgttctgggcacggagaatgcgctggatacgacgtctgtcactgtaacacttcctggacaggtccagcatgcagcattccagattgcagtgctgtgaagaactgctctaatcaaggagagtgtgttctaccagacacttgtgcgtgttacccagcttatgacggcaaatactgtgatcaaaaggcaaaacccaacaccaatgcacctagctttaagcaactcttttataacgtaaccatcatggaaaactccccagtaggaacaatgattctgcaagtaaatgccaacgataccgattcgggaagaaacggtcaggtattttatgccgtagttggtgacagggacattgagaatacacttgccattggcgggacatcaggaaaagtttacagcacagtgatgctagattttgaaacgacctcgcctttcaacgtgaccattgtagcatccgatgatggatttccacagaaatcgggattcgccatcgcacagataacagtggtggacgacaatgacaactgtccaacgtttactgaaccatctgcgaatctacagcttgagttctcggtgcttaatccaggagacatcgtcaccaaagtttctgccattgacttggacagtggaataaacagcgatataagttatcagatatccaaaaacaaggcgttctccattgatccaaaaactggtgttatcactgtcgcctcaaatttaacaaacactgtgtatcagctcatagtcagtgctagtgataatggagtcgtttcctgcacgacggagacaagtttgactgttagaattaccagcttagctacaaatgaaccatggacatcatccaccagtcctagcacagaaaagataaccgagacttctccgcatcatacagagagtacatctaagtcttctgagtttacagaccccacaggcaaagacaagagtacaacacctagtgagtcttctcgcctaccaaccgaagtaacagcagtgccacaaaagagttcaaactatgtcgtcattggtgcctctattggtggaggagtactggtgcttattatcgcaatactggtaataagaaagtgtctttgtaaaaccagaatctcttcagccaagcaaacagaaaatactggaaaagtgaatgactgcctggaaggtgattttgagttatctaccatgtctcaaaagacatga

Transcript

evm.model.Ap10.1023

ATGGCTTCTGTTTGTCTAGAGCCCTGTCAGGTGTCTTATCAGCTGAAGATTCTGACGACAGCTCTTTTCTCTGTTGCTATGTTGAAGAAGTCAATCAGCAAGGTCCAGTGGCTGTCTTTGTTCATGCTGTTTGTTGGTGTCTCTGTCGTTCAGCTACAGCCTGTTGATGGTCCTGTGCCACAGAGTCCCGAGGAGAGCCTCCCAACACAGAAAACTTTGTCACAAACCCAGAATCCTTGGTTGGGTCTTGCTGCTGTTGTAGCCTCGAGTATTTGCTCGGGATTTGCAGTACTTTCCCTGGCAGATCAAATGAAAAGTAATTTGAAGTGGGTTTATCTACGATCAGACTGGAATAGCCCGAAACCAAAATTGAAGGCTGGAGCTAGTATAGATATCACAGTGACACCCACGCTTTCTGTGAAACTGCCAGCGATGCCAAATAGGTTCGGAAAGGCAGTGAAGGCACCTTCACTTAATATACTGGATAAGCTAGTTGTGGAAGTTGCTGATATCTTGGACCTTTCTTTGTCACTGTCTGTAAGTGCACCACTAAAATCAGGAATATCACTAGTCTATCCTTCCAGTCAGTGCCAAGGAAAAGCACCCGCTGAACTTGCAGGCTATTATGGGGTTTCTGACGTGGTTTTTGGTCTTTCGGTTGGATTTCTTGGTAAACATTTAGGATTGTCATTGAATACTGGATTTTCTCTAATAAGACGGACCAGAGATTGTGTCTGTCCACTTTTCAATGCTAAGATATGTGTTGGACCTACCCCAAGACCACCAAGGCCAAGACCTCCAATAGAGAAAACTCCGAAACCTCCTGACAAAGAAGAACAGAGGAAAAAGAGAGCAATTGGTTGTTCCGGTCAGGGTAAGGTTCCAGGACCTCCATGCGGAATAGAGCCTGCCTGTGCTGCAAGGAGAATGGGACCTAACTGTACGATGCCTGATATGCGGCCCTTTCAAAACTGCTCTGGGAATGGAGAGCCTGTTATAGCCCCGCTCTGTGGGGCGGTATGTTGGTGTTTCGGAGGATGGGAGGGAGAATATTGTGAAAGAATATCTGCAAATGGCGGAGGTGACCCTCACCTGCAAACTTTAGATGGGGTAGATTTCGACTTTTTCGGTATTGGAGAATTCTGGGGTTGTAAAAGTGTCCATAATGACTTTGGTCTTCAGTTTCGCTTTTATTATTACGAACGAGCCTCGCTAATTGGAGGAGTTGCGCTGAAGGCTGGACGGAGCATAGTGACAGTTATGACGATCAAGACTGAAAACGCTCAAGATACTCCCATCGTCAGAGTCGATGGAATGTTGTTAAATGTTACCAGCAACTCTTCAAAACCTATCGATATCAACAATGGCACAGTTTTGTTAGATCGTCAGAGGCGTTTTACTTTTGAAGCGGAAGAGAACAGTGTCGCGCTAATTTCACTGCAGTACGATTCAGGCGAGTATGCAACATGTGTCACAATAACCATTGATGTTCGACATAGCCGAGTGATGAAAAGGCAATACTTGAATGTTCTGTATTCACCCACTGCTGCATACAAAGGTCATACTGAGGGACTGTGTGGCTTAATGGACAACAATGCAACAAATGACTTCATGGGACCAGATAGCATTCTTTACAAGGACGCAGTACAATTTGCAGAATCATGGAGAATTAAAGATTGCCAAGATGGATCAGGCACATTTGATTCTTGGTCTTGGAACTCATCGAACTTTTACCATGAAGACATAATGGACCTGACGTATACAGATCCATCCTATCTTCCTACTTACTCACTGGACGGAATTTCACAGTCTCTGCTTGAGATCGCAACAAGTATGTGCAAATCCCTGAATATTTCTGATAACGATTTGCACAGCTGTATCTTTGATGTCGCTATAACTAACGACACAACTTTTACTGATCAAGAAAACTTCAAACGAGACTGTCCTGCTCAATGTTCAGGTAAAGGCAGGTGTGTCAACGGAACATGTAAATGCATCGAGGGATGGGCTGGAGATAGTTGTGATAAAGGTTCTTGTCTAAACTGTTCCACTGTTCATGGACAATGCGTCAAGGGATTCTGTGTATGCGACTTAGGTTGGGAAGGACGAAGCTGCGAGACTAAAGCTACGTGCCACAGCGTGAACAACTGTACGAGTCCTGTCCACGGTTTGTGTAAGACCACCGACATTTGTCATTGCAACCCTGGATACATAGGTCGTGACTGCAGCGTGGTCCCAACATGTTTTAATTTATCAAACTGTACTGCCAATGGACTTTGCGTGGATTATGATGTTTGCAAGTGCAATGTAGGTTGGACTGGAACCAACTGTACACAGTACTCATGTGAACGCTTGGATTATTGCTCAGAGCATGGGCGTTGTGTGGCCCTTGACGAATGTGCTTGTGATTATGGCTGGACCGGAGCAAGCTGCGCTCTCCCTGACTGTGCAGCTGTCAATCAGTGCTCCGAGAAAGGAGAGTGTGTTGCCAGCAACTTGTGCCGTTGTTATACGGGGTTTCTAGGGACAAACTGCAGTGAGGTGGCCGACTGTAGTGAGTTTGCAAACTGTAGCGGGCATGGTGTTTGTGTTTTAACGAAGTTGCTGAATATGTCGTGCAGTTGTTTCACTGGTTTCAGTGGAGCTAACTGCAGTCAACCTACATGTACAACTGTGAGGAATTGTTCCGATCACGGTGCATGCATAGAAGCGGAGCTCTGTAAATGTGACATGGGCTACAATGGCACAGACTGCAGCAACTTCTCATGTGAAGCTGTCAATTCATGTTCTGGGCACGGAGAATGCGCTGGATACGACGTCTGTCACTGTAACACTTCCTGGACAGGTCCAGCATGCAGCATTCCAGATTGCAGTGCTGTGAAGAACTGCTCTAATCAAGGAGAGTGTGTTCTACCAGACACTTGTGCGTGTTACCCAGCTTATGACGGCAAATACTGTGATCAAAAGGCAAAACCCAACACCAATGCACCTAGCTTTAAGCAACTCTTTTATAACGTAACCATCATGGAAAACTCCCCAGTAGGAACAATGATTCTGCAAGTAAATGCCAACGATACCGATTCGGGAAGAAACGGTCAGGTATTTTATGCCGTAGTTGGTGACAGGGACATTGAGAATACACTTGCCATTGGCGGGACATCAGGAAAAGTTTACAGCACAGTGATGCTAGATTTTGAAACGACCTCGCCTTTCAACGTGACCATTGTAGCATCCGATGATGGATTTCCACAGAAATCGGGATTCGCCATCGCACAGATAACAGTGGTGGACGACAATGACAACTGTCCAACGTTTACTGAACCATCTGCGAATCTACAGCTTGAGTTCTCGGTGCTTAATCCAGGAGACATCGTCACCAAAGTTTCTGCCATTGACTTGGACAGTGGAATAAACAGCGATATAAGTTATCAGATATCCAAAAACAAGGCGTTCTCCATTGATCCAAAAACTGGTGTTATCACTGTCGCCTCAAATTTAACAAACACTGTGTATCAGCTCATAGTCAGTGCTAGTGATAATGGAGTCGTTTCCTGCACGACGGAGACAAGTTTGACTGTTAGAATTACCAGCTTAGCTACAAATGAACCATGGACATCATCCACCAGTCCTAGCACAGAAAAGATAACCGAGACTTCTCCGCATCATACAGAGAGTACATCTAAGTCTTCTGAGTTTACAGACCCCACAGGCAAAGACAAGAGTACAACACCTAGTGAGTCTTCTCGCCTACCAACCGAAGTAACAGCAGTGCCACAAAAGAGTTCAAACTATGTCGTCATTGGTGCCTCTATTGGTGGAGGAGTACTGGTGCTTATTATCGCAATACTGGTAATAAGAAAGTGTCTTTGTAAAACCAGAATCTCTTCAGCCAAGCAAACAGAAAATACTGGAAAAGTGAATGACTGCCTGGAAGGTGATTTTGAGTTATCTACCATGTCTCAAAAGACATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5DRA9	Protocadherin gamma-B2 OS=Pan troglodytes OX=9598 GN=PCDHGB2 PE=3 SV=1
Q5DRA8	Protocadherin gamma-B4 OS=Pan troglodytes OX=9598 GN=PCDHGB4 PE=3 SV=1
Q91Y02	Protocadherin beta-18 OS=Mus musculus OX=10090 GN=Pcdhb18 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000535 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF04142 all species →	Nuc_sug_transp	Nucleotide-sugar transporter	Family	Interproscan
PF07974 all species →	EGF_2	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR007271 all species →	Family	Nucleotide-sugar transporter	Interproscan
IPR013111 all species →	Domain	EGF-like domain, extracellular	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR051216 all species →	Family	Teneurin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11219 all species →	TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0015165 all species →	Molecular Function	pyrimidine nucleotide-sugar transmembrane transporter activity	Interproscan
GO:0090481 all species →	Biological Process	pyrimidine nucleotide-sugar transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008045 all species →	Biological Process	motor neuron axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1023.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.