Gene detail

Detailed information of evm.model.Ap10.1052 in Astrangia poculata

Genomic Location: Ap10:11152171...11174405
NR annotation: CAH3113053.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1052

atggctcgcaatttttccccgcgtataaagcgaaagaagactatttcatctccacaacaaaggataatttcacaatattttactccaaggagtggtatcagcaaagaagaagtgaattttctcgtagcgccaattgcaaatccgtcgtcccgcggccaaaaaacccgtcgggcaactggcgtcgacggactcccggatcaaattacagttaccccggcgtttggtttcacgtctgcagcaaagatttatcagcaagctggaaagtggtgttctggggctcaaaaccagcaaattttgtctggtcagcacaattcgggaagctcaacttgcaaatctgcagtttctgaatcggagcatgtttcgtggaaatgttctcctttaaaaaatagttctatcgaaggacaacaaacgcacattgacacaaaaacacgtgtagctgacctcatggcgtcgtcaacttcttcaggttcaagtgcgctaacatctaattcgtcttcttcgtcgagtacacaaccacaaaatgtaagacacacacgcagatcgagttcaagagcacagaggcagttgaaaggcaggcctgcaaaaaagcagaaaggagcaccggagacaattactgtcaatagcgaagacgagaaatgtccaagcgaggatgactgttgcgttattgtgaatgtagtgggtaacaggagagctaggagtgattccgaagtggtagaaattacaagctgttctcagtcatcttctactgaatcaagtagtcaagctagcaaggaagaaagtagctctcaaagttcttgtactagtgaatctgatcaaaagaatactttttctttcaaaaagtcatcatcttccttaaattctgccaagcaaaccgaaaagcaggcatcagcaagatcaacgtttggtctggttggcggcgatgtcagtgactcagatgatgatgacgacttgaagtgtgacagcgagtttgcacaactgcctgtagagattttggagaatatattctgccagcttcctataattgatcttatgttgaactgttccttggtttgcaagaagtggtataccataatatcaagagactcgtttataccttggaagaaaaagtactttcttctgaagaagaaagacaactcagcggaagatgagatgattaaacttttggatgacacaggcatgttagatattgatttatttccactacatcttgcaagatttatggacaattttaaaagaaaagggcactcgtggccatcactgttagaaaatttgaaaacacattgcaagttcccattgatagaaacgttcttggaaactcttactgacaaatccaaaatggatcctagtccatggtctgttgttgctcttctgacgttagtttgccagacagtccgtgaagtacaaggcatcatcaattgcctgacaaaatccacttcctgcctgatacatgatattttagagtgtttttactgtttggcctcagtgtttttctaccttgactcacagcacagaattggaagtgggcttcactacagaatattttacacattgtatttgtatgagaatgcttttgaagccacatgtgcctcaattggctctgtgtttggtcagaattctactggacagcagtcattgatgagatacagatctgccacagacaagctacagcttacacatgaacaagtgcgaatcatcaagcatgatgttaagtcaggagagatcataaaaattgtagcatttgcgggaactggaaagacaacaacattagttgagtacactaagatgaggccaatggaacggttcctcaatgtggcatacaataagtcaattcagcaacatgcactgaagactttccccagcaatgttgagtctcgaaccatccactccttggctttcagaggtgtaggcttccgatacaaacacaagcttgcctttggcctgcggataagcaccatcatgaatgccctcccaaacgagtgtggctatctgcatgcaagacgagttgaagatactctcaaaaacttcatagcctctgctgacacttctgtaagaactgaacatgtgcctcgtgccaacagagcagtcgtggaggggtctttatcagagggaagtgacatagttcagtcaatctttgggaatcatggtgcagacatgaagtatttgaacagtgacaagtacattcagaaagttgtctcccatgctgaacttctgtggcaaagaatgagagatcagagagataaggacttccctatcacccatgatggttacctcaagatctttcagcttaacagaccagttttggatggatatgattgcctgcttgttgatgaggctcaggattgtactcctgctgcctcagacattcttcttagacagtcttgtgccaagattttggttggtgatcctaatcaacagatttattcctttcgtggagcaagaaatgcccttcaggaggtgacaagtactcacactttctacctcactcagtcattcagatttgggcctgagatagcctatgtggcatcttgtgtgctggatgtattgaaaggcataagaaacaagactctggttggaggagctaagagaggttctgtgatgggtgagagatctggtcagctgtgcattattacacgctgtaattacacgctgttcaatgaagcagtcaacgtttgttgtgcaaataataacaccaaagttggttttgtcgggggtatacaaggtcttgctcttgaccgcgtgttggatattcacaagctctttactgctggtacaaatcaatcttatttaggtatcaaggaccctttgatcaagaaattcaaatcattttcagagttaaagaaatatgccaaagttgctccagatcctgaactgcttggcaagattaagatcgttgagacgcaccacgtgctgttgcagcatagaatcgagaagataaagtcaaaagccattgccaatttacagcaagcagatactattttctccacggcacacaaagccaaaggacttgagtttgatactgttcgagtgactgatgactttctgccaggatcagacatcgggatgacaatgcatgaacacggagaggacgagaaaaacttggtgtacgtagccgttagtcgtgcaaagaaatgtcttcaactaaacagtacaatccttggcattcttggcgccagaaaggagcattttgtgaaggcaatatcaccgaaggaattaactcagccggctatctgtgtgagttgcaagacaccaatcgacttttctccgcgtcctcatgttgtcatccggaaagaagaaataactttgggtggaaatgttaaagttgctggcggtgttctttgcccctcatgtgcgctcatgaaaatatctcatataggatgccttgcttacgtaaacgttgaagactgcaaacctagtcctcgttcaaaatga

Transcript

evm.model.Ap10.1052

ATGGCTCGCAATTTTTCCCCGCGTATAAAGCGAAAGAAGACTATTTCATCTCCACAACAAAGGATAATTTCACAATATTTTACTCCAAGGAGTGGTATCAGCAAAGAAGAAGTGAATTTTCTCGTAGCGCCAATTGCAAATCCGTCGTCCCGCGGCCAAAAAACCCGTCGGGCAACTGGCGTCGACGGACTCCCGGATCAAATTACAGTTACCCCGGCGTTTGGTTTCACGTCTGCAGCAAAGATTTATCAGCAAGCTGGAAAGTGGTGTTCTGGGGCTCAAAACCAGCAAATTTTGTCTGGTCAGCACAATTCGGGAAGCTCAACTTGCAAATCTGCAGTTTCTGAATCGGAGCATGTTTCGTGGAAATGTTCTCCTTTAAAAAATAGTTCTATCGAAGGACAACAAACGCACATTGACACAAAAACACGTGTAGCTGACCTCATGGCGTCGTCAACTTCTTCAGGTTCAAGTGCGCTAACATCTAATTCGTCTTCTTCGTCGAGTACACAACCACAAAATGTAAGACACACACGCAGATCGAGTTCAAGAGCACAGAGGCAGTTGAAAGGCAGGCCTGCAAAAAAGCAGAAAGGAGCACCGGAGACAATTACTGTCAATAGCGAAGACGAGAAATGTCCAAGCGAGGATGACTGTTGCGTTATTGTGAATGTAGTGGGTAACAGGAGAGCTAGGAGTGATTCCGAAGTGGTAGAAATTACAAGCTGTTCTCAGTCATCTTCTACTGAATCAAGTAGTCAAGCTAGCAAGGAAGAAAGTAGCTCTCAAAGTTCTTGTACTAGTGAATCTGATCAAAAGAATACTTTTTCTTTCAAAAAGTCATCATCTTCCTTAAATTCTGCCAAGCAAACCGAAAAGCAGGCATCAGCAAGATCAACGTTTGGTCTGGTTGGCGGCGATGTCAGTGACTCAGATGATGATGACGACTTGAAGTGTGACAGCGAGTTTGCACAACTGCCTGTAGAGATTTTGGAGAATATATTCTGCCAGCTTCCTATAATTGATCTTATGTTGAACTGTTCCTTGGTTTGCAAGAAGTGGTATACCATAATATCAAGAGACTCGTTTATACCTTGGAAGAAAAAGTACTTTCTTCTGAAGAAGAAAGACAACTCAGCGGAAGATGAGATGATTAAACTTTTGGATGACACAGGCATGTTAGATATTGATTTATTTCCACTACATCTTGCAAGATTTATGGACAATTTTAAAAGAAAAGGGCACTCGTGGCCATCACTGTTAGAAAATTTGAAAACACATTGCAAGTTCCCATTGATAGAAACGTTCTTGGAAACTCTTACTGACAAATCCAAAATGGATCCTAGTCCATGGTCTGTTGTTGCTCTTCTGACGTTAGTTTGCCAGACAGTCCGTGAAGTACAAGGCATCATCAATTGCCTGACAAAATCCACTTCCTGCCTGATACATGATATTTTAGAGTGTTTTTACTGTTTGGCCTCAGTGTTTTTCTACCTTGACTCACAGCACAGAATTGGAAGTGGGCTTCACTACAGAATATTTTACACATTGTATTTGTATGAGAATGCTTTTGAAGCCACATGTGCCTCAATTGGCTCTGTGTTTGGTCAGAATTCTACTGGACAGCAGTCATTGATGAGATACAGATCTGCCACAGACAAGCTACAGCTTACACATGAACAAGTGCGAATCATCAAGCATGATGTTAAGTCAGGAGAGATCATAAAAATTGTAGCATTTGCGGGAACTGGAAAGACAACAACATTAGTTGAGTACACTAAGATGAGGCCAATGGAACGGTTCCTCAATGTGGCATACAATAAGTCAATTCAGCAACATGCACTGAAGACTTTCCCCAGCAATGTTGAGTCTCGAACCATCCACTCCTTGGCTTTCAGAGGTGTAGGCTTCCGATACAAACACAAGCTTGCCTTTGGCCTGCGGATAAGCACCATCATGAATGCCCTCCCAAACGAGTGTGGCTATCTGCATGCAAGACGAGTTGAAGATACTCTCAAAAACTTCATAGCCTCTGCTGACACTTCTGTAAGAACTGAACATGTGCCTCGTGCCAACAGAGCAGTCGTGGAGGGGTCTTTATCAGAGGGAAGTGACATAGTTCAGTCAATCTTTGGGAATCATGGTGCAGACATGAAGTATTTGAACAGTGACAAGTACATTCAGAAAGTTGTCTCCCATGCTGAACTTCTGTGGCAAAGAATGAGAGATCAGAGAGATAAGGACTTCCCTATCACCCATGATGGTTACCTCAAGATCTTTCAGCTTAACAGACCAGTTTTGGATGGATATGATTGCCTGCTTGTTGATGAGGCTCAGGATTGTACTCCTGCTGCCTCAGACATTCTTCTTAGACAGTCTTGTGCCAAGATTTTGGTTGGTGATCCTAATCAACAGATTTATTCCTTTCGTGGAGCAAGAAATGCCCTTCAGGAGGTGACAAGTACTCACACTTTCTACCTCACTCAGTCATTCAGATTTGGGCCTGAGATAGCCTATGTGGCATCTTGTGTGCTGGATGTATTGAAAGGCATAAGAAACAAGACTCTGGTTGGAGGAGCTAAGAGAGGTTCTGTGATGGGTGAGAGATCTGGTCAGCTGTGCATTATTACACGCTGTAATTACACGCTGTTCAATGAAGCAGTCAACGTTTGTTGTGCAAATAATAACACCAAAGTTGGTTTTGTCGGGGGTATACAAGGTCTTGCTCTTGACCGCGTGTTGGATATTCACAAGCTCTTTACTGCTGGTACAAATCAATCTTATTTAGGTATCAAGGACCCTTTGATCAAGAAATTCAAATCATTTTCAGAGTTAAAGAAATATGCCAAAGTTGCTCCAGATCCTGAACTGCTTGGCAAGATTAAGATCGTTGAGACGCACCACGTGCTGTTGCAGCATAGAATCGAGAAGATAAAGTCAAAAGCCATTGCCAATTTACAGCAAGCAGATACTATTTTCTCCACGGCACACAAAGCCAAAGGACTTGAGTTTGATACTGTTCGAGTGACTGATGACTTTCTGCCAGGATCAGACATCGGGATGACAATGCATGAACACGGAGAGGACGAGAAAAACTTGGTGTACGTAGCCGTTAGTCGTGCAAAGAAATGTCTTCAACTAAACAGTACAATCCTTGGCATTCTTGGCGCCAGAAAGGAGCATTTTGTGAAGGCAATATCACCGAAGGAATTAACTCAGCCGGCTATCTGTGTGAGTTGCAAGACACCAATCGACTTTTCTCCGCGTCCTCATGTTGTCATCCGGAAAGAAGAAATAACTTTGGGTGGAAATGTTAAAGTTGCTGGCGGTGTTCTTTGCCCCTCATGTGCGCTCATGAAAATATCTCATATAGGATGCCTTGCTTACGTAAACGTTGAAGACTGCAAACCTAGTCCTCGTTCAAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1ND48	F-box DNA helicase 1 OS=Gallus gallus OX=9031 GN=FBH1 PE=2 SV=2
Q8K2I9	F-box DNA helicase 1 OS=Mus musculus OX=10090 GN=Fbh1 PE=1 SV=1
Q8NFZ0	F-box DNA helicase 1 OS=Homo sapiens OX=9606 GN=FBH1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003505 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00580 all species →	UvrD-helicase	UvrD/REP helicase N-terminal domain	Domain	Interproscan
PF00646 all species →	F-box	F-box domain	Domain	Interproscan
PF13361 all species →	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014016 all species →	Domain	UvrD-like helicase, ATP-binding domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR014017 all species →	Domain	UvrD-like DNA helicase, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000212 all species →	Family	DNA helicase, UvrD/REP type	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070 all species →	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10300	FBH1, FBXO18; F-box DNA helicase 1	EC:5.6.2.4	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.