Gene detail

Detailed information of evm.model.Ap10.1104 in Astrangia poculata

Genomic Location: Ap10:11532350...11544831
NR annotation: XP_020626486.1, cytosolic Fe-S cluster assembly factor NUBP2-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3KQF0	Cytosolic Fe-S cluster assembly factor nubp1-A OS=Xenopus laevis OX=8355 GN=nubp1-A PE=2 SV=1
Q6P298	Cytosolic Fe-S cluster assembly factor nubp1 OS=Danio rerio OX=7955 GN=nubp1 PE=2 SV=2
Q5I050	Cytosolic Fe-S cluster assembly factor nubp1-B OS=Xenopus laevis OX=8355 GN=nubp1-B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001354 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10609 all species →	ParA	NUBPL iron-transfer P-loop NTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033756 all species →	Family	Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35	Interproscan
IPR019591 all species →	Family	Mrp/NBP35 ATP-binding protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23264 all species →	NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0140663 all species →	Molecular Function	ATP-dependent FeS chaperone activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03593	mrp, NUBPL; ATP-binding protein involved in chromosome partitioning	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.