Genomic Location: Ap10:1280542...1282878
NR annotation: XP_020621900.1, silk gland factor 3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.111 |
| Transcript |
| evm.model.Ap10.111 |
| Protein |
| evm.model.Ap10.111 |
| UniProt accession | Description |
|---|---|
| Q17237 | Silk gland factor 3 OS=Bombyx mori OX=7091 GN=SGF3 PE=2 SV=1 |
| P70030 | POU domain, class 3, transcription factor 2-B OS=Xenopus laevis OX=8355 GN=pou3f2-b PE=2 SV=1 |
| P31365 | POU domain, class 3, transcription factor 2-A OS=Xenopus laevis OX=8355 GN=pou3f2-a PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001851 (this species only) |
| Transcription factor family | Homeobox · all TF in this species |
| Transcription factor family | Pou · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00157 all species → | Pou | Pou domain - N-terminal to homeobox domain | Domain | Interproscan |
| PF00046 all species → | Homeodomain | Homeodomain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010982 all species → | Homologous_superfamily | Lambda repressor-like, DNA-binding domain superfamily | Interproscan |
| IPR000327 all species → | Domain | POU-specific domain | Interproscan |
| IPR013847 all species → | Domain | POU domain | Interproscan |
| IPR017970 all species → | Conserved_site | Homeobox, conserved site | Interproscan |
| IPR001356 all species → | Domain | Homeobox domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR050255 all species → | Family | POU domain transcription factor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11636 all species → | POU DOMAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
evm.model.Ap10.111.Transcript abundance of evm.model.Ap10.111 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
