Gene detail

Detailed information of evm.model.Ap10.1225 in Astrangia poculata

Genomic Location: Ap10:12732275...12735187
NR annotation: XP_044163516.1, uncharacterized protein K02A2.6-like [Acropora millepora]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1225

atgggagacccagctccaggcgaagccggaattccagctgaacaacagcaattagtagttgacgagccgaatgaagccggcgctccgccacaacagactgcacaaccacaagcaccggtacaacaacaaatggttcaacaaatctccgtggcaaattaccaagttccaccaccggaaaaattcaactttaagcccgaagaatggccacgctggatcaagcgttttgagagatttcgaaaagcgaccggactcgaccaaaaggacggcgatagccaagtaaacactttgatttattcgatgggcgaagaagctgacgacatcatggtcgcattcggactatcaaacgaagaagcgaagcagtatcacgtcgtgaaaggcaagtttgaagctcatttcgtggtaaagagaaatgtaatatttgagcgagcgaaatttaaccagagaagccaacaggatggtgagtcagtggataatttcataacagatttatattgccttgctgaatactgcgaatttggaacattgagagacgatctcatcagagatagaatcgttgtagggataaaagacaagaagctctctgaacaactgcaactggattctaagttgactttggagaaagcaatcacaaaagccagacagtcagagacagttaagaagcaacaacctttcctacaggaagccaagtctgagcctcctgtaccagccagtgtggaccacttatccaaaggaaaaggaaaagattctaaagaagacataaagaagaaaaagaaaccacccaagccacccaagtttaaaaatgggaagactcctgaagcacagtgttcaaggtgcctgggtcaatcacacccaaagagacaatttccagccagagaatcaaaatgtatgaagtgttctaaagtaggacattgggcaaaggcttgtaagtccctaccagacaagagagtggctgaagtgaatttcactgggagacaagatgaaggagagttattcctgggtgaactcactgaactatctgctgtccaaggaggggcaggagattcatggaaagcactcgtctcgatgaatggacaactgatggagttcaaagtagattctggtgcagatgtaacagttattccgccaagcttatttcatagcctgaaaccaactccatcacttagcaagacaaccagggtactcatgggtccatgtaaacagaaactgagctgcctaggaactttcacagctaagttgcgagttcaagacaaggttactcaggaacaagtgtatgtgatagaagatttggagcgacctttgctaggaagagagccagctgaacatctaaagctaattagcagacttgacagcctaagcagtgtggactacaagagtaaagtagcagacaaataccccaagttgttcaagggactgggtgttatgaaggacagttactgcatcacactccaagaagatgccaaaccttttcaagtaacagtaccaaggaaagtgcccttccctctgtatcagaaaactaaggaagagttagacagaatgttggagacaggtgtcatatccagagttgaccagcccactgattggtgtgctcctatggttgttactcctaagagcaatgggaacgaatgggtatggggaagtgagcaacagaaagcatttgagcagatcaaagctgacctcacacaagtcccagtactggcactgtacgatccaaacaaggaaaccaaagtggcagctgatgcttcctcctatggcctaggcggggtagttcttcaactccaaccagacaactcctggcgaccagtttcattcatatcaagagcgatgactcccaccgagaccagatatgcacagatagaaaaagaagccctagcactcacctgggcatgcgaacgatcctgggagtacatcgtggggaagtcgatctccgttgaaactgaccacaaacccctggtgccacttctgagtacgcacactctataccaacttccgccgcgaatccagagattcagaatgcgactaatgagattccacttcaaggagatcaagcatgttcctggaaagaagatgtacatacccgatgcgctttcaagactccaagtccgaagccaagcagttcagtctacaattgatgatgacgaaatgcacgcacacattggaagcgtgatctcatcactgcctgcctcagacttcagcagatcatggaagcacaggaagaggatccagtctgcagacagatcaaagtgtactgctatgaaggatggcctgacaagcattccttaa

Transcript

evm.model.Ap10.1225

ATGGGAGACCCAGCTCCAGGCGAAGCCGGAATTCCAGCTGAACAACAGCAATTAGTAGTTGACGAGCCGAATGAAGCCGGCGCTCCGCCACAACAGACTGCACAACCACAAGCACCGGTACAACAACAAATGGTTCAACAAATCTCCGTGGCAAATTACCAAGTTCCACCACCGGAAAAATTCAACTTTAAGCCCGAAGAATGGCCACGCTGGATCAAGCGTTTTGAGAGATTTCGAAAAGCGACCGGACTCGACCAAAAGGACGGCGATAGCCAAGTAAACACTTTGATTTATTCGATGGGCGAAGAAGCTGACGACATCATGGTCGCATTCGGACTATCAAACGAAGAAGCGAAGCAGTATCACGTCGTGAAAGGCAAGTTTGAAGCTCATTTCGTGGTAAAGAGAAATGTAATATTTGAGCGAGCGAAATTTAACCAGAGAAGCCAACAGGATGGTGAGTCAGTGGATAATTTCATAACAGATTTATATTGCCTTGCTGAATACTGCGAATTTGGAACATTGAGAGACGATCTCATCAGAGATAGAATCGTTGTAGGGATAAAAGACAAGAAGCTCTCTGAACAACTGCAACTGGATTCTAAGTTGACTTTGGAGAAAGCAATCACAAAAGCCAGACAGTCAGAGACAGTTAAGAAGCAACAACCTTTCCTACAGGAAGCCAAGTCTGAGCCTCCTGTACCAGCCAGTGTGGACCACTTATCCAAAGGAAAAGGAAAAGATTCTAAAGAAGACATAAAGAAGAAAAAGAAACCACCCAAGCCACCCAAGTTTAAAAATGGGAAGACTCCTGAAGCACAGTGTTCAAGGTGCCTGGGTCAATCACACCCAAAGAGACAATTTCCAGCCAGAGAATCAAAATGTATGAAGTGTTCTAAAGTAGGACATTGGGCAAAGGCTTGTAAGTCCCTACCAGACAAGAGAGTGGCTGAAGTGAATTTCACTGGGAGACAAGATGAAGGAGAGTTATTCCTGGGTGAACTCACTGAACTATCTGCTGTCCAAGGAGGGGCAGGAGATTCATGGAAAGCACTCGTCTCGATGAATGGACAACTGATGGAGTTCAAAGTAGATTCTGGTGCAGATGTAACAGTTATTCCGCCAAGCTTATTTCATAGCCTGAAACCAACTCCATCACTTAGCAAGACAACCAGGGTACTCATGGGTCCATGTAAACAGAAACTGAGCTGCCTAGGAACTTTCACAGCTAAGTTGCGAGTTCAAGACAAGGTTACTCAGGAACAAGTGTATGTGATAGAAGATTTGGAGCGACCTTTGCTAGGAAGAGAGCCAGCTGAACATCTAAAGCTAATTAGCAGACTTGACAGCCTAAGCAGTGTGGACTACAAGAGTAAAGTAGCAGACAAATACCCCAAGTTGTTCAAGGGACTGGGTGTTATGAAGGACAGTTACTGCATCACACTCCAAGAAGATGCCAAACCTTTTCAAGTAACAGTACCAAGGAAAGTGCCCTTCCCTCTGTATCAGAAAACTAAGGAAGAGTTAGACAGAATGTTGGAGACAGGTGTCATATCCAGAGTTGACCAGCCCACTGATTGGTGTGCTCCTATGGTTGTTACTCCTAAGAGCAATGGGAACGAATGGGTATGGGGAAGTGAGCAACAGAAAGCATTTGAGCAGATCAAAGCTGACCTCACACAAGTCCCAGTACTGGCACTGTACGATCCAAACAAGGAAACCAAAGTGGCAGCTGATGCTTCCTCCTATGGCCTAGGCGGGGTAGTTCTTCAACTCCAACCAGACAACTCCTGGCGACCAGTTTCATTCATATCAAGAGCGATGACTCCCACCGAGACCAGATATGCACAGATAGAAAAAGAAGCCCTAGCACTCACCTGGGCATGCGAACGATCCTGGGAGTACATCGTGGGGAAGTCGATCTCCGTTGAAACTGACCACAAACCCCTGGTGCCACTTCTGAGTACGCACACTCTATACCAACTTCCGCCGCGAATCCAGAGATTCAGAATGCGACTAATGAGATTCCACTTCAAGGAGATCAAGCATGTTCCTGGAAAGAAGATGTACATACCCGATGCGCTTTCAAGACTCCAAGTCCGAAGCCAAGCAGTTCAGTCTACAATTGATGATGACGAAATGCACGCACACATTGGAAGCGTGATCTCATCACTGCCTGCCTCAGACTTCAGCAGATCATGGAAGCACAGGAAGAGGATCCAGTCTGCAGACAGATCAAAGTGTACTGCTATGAAGGATGGCCTGACAAGCATTCCTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000696 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF13650 all species →	Asp_protease_2	Aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1225.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.