Gene detail

Detailed information of evm.model.Ap10.1260 in Astrangia poculata

Genomic Location: Ap10:12952306...12959514
NR annotation: CAH3153890.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1260

atgggttgccatgtctccaacattcgttacgagaagctggatgacaaaccagatgaaactaaaacattctttggtaggctaacatttggttttctgtcgggtttaatcaaaactggtaacaccaggcctttagaagaagccgatctgtcttctctggaacttgaaagcacgcaatatttgaccgaaaaacttgtaaaagaatgggaaaatgagataaaagtaaaaggagacagctgttctcgaccgcgtttgtggagcgctctgctcagagccgtcgacaaaaagctcatgacgatgattgtacttctggccattttaagctccttctgcagacttattcaaccagttgttctcagctttctcctggaagaattgactactggttcaccctttgatgcaagcatattgtgtctttattcagctcttctatgtttcagctcttttgttcaaacatttgctgtgcatcacgccacttatgccacgttcacgatggcggttcaagtcaaggcctccttgatcggactggtgtacaaaaagatcatgattaaaaaacatcacatcctggctgagaaatcttcaggctttgccataaacttgattacaaaagatatgatccatatccatcaagccattagcaacttagattcgcttacagctcccatagagatacttgtcgtcttttgcctgctttggaaacttgtcggttggcagacgttcggaggggtagtcttttcgataattctgatcgcttaccagacggcgctgggaaatgttttcaaaatcctccaagagaaagtcgccaggctgaccgacaggagactgcgattaatctatgacgtagtttccggtatccgtgtgctcaagatgaatgcatgggaatggtgcttccgtgatctggtttccagtgttaggcggtgtggagaaaccgcaaggcacggtcgaaaagtttactacgtaggacgtttctatagttaccatgtgatcgccagcagtaacaacgaaagtgctccgtcatcgccagagatcgcactaccaagcgaaaattcaaacagtcgtttgtcatcttatggaagacaagatttaaaggttattgatcttcttttatctgagcttaaccttgtttacaagaaaggagttatcttggctggttacacctctgcgtattcctgttacccaataatttccagttttgtctctttatttccgttcttaatggatgggaatcatctgacacctcagaacgtcttcaccactctggctctccttggtgtgcttcaaaaaccagtaacgattctatttgcctatgagttgcgtgctctgtttcaagcaacaacaacgcttgaaagaatcgagtcctttcttttcgaagataactctggcaatattcacccaaacagttacaatgaagaacttggtaaccagttgcagtgtcacggaaagaaatcagcactgacaagccatgtttgtaatcaaggaaaaccgttcctttgtttaaacaacgtgcatttccgtccatgggatgattccaactatttaaacatgtgtatatctgatagtcgattgattggaataacaggtccagtaggatgtggcaaaacttctctatttcacattatcatcggcgaaataccatcagccgtcggacaaattgctcaccaaggacgaatcgcttatgtttgccaaacaccctgggtgttttcaggaacggtccgtgagaatattctatttgggaagaagtataaccatggagcttttcaacgagttgtagatgtttgttccttgaaagaagatctcgattcgctttcaagtggtgatatgacccatgtcggtgaacgcggtgtaagtttgagtggcggtcagcgggctcggattaacttggcacgcgcagtgtattctgatgcagatatttatctactggatgatcctcttagcgctgttgacgcaaaagtgtcaaatgaactatttgaacgatgcatttgtggcgctttgtctgatcgcattcggctcttcataactcatcaatcgttttgcctccagaagacggatttggttcttttgatgggcaaggacggtgcattgtcacaaggcacgttcaagaaactatgtgaatcgggacaattttctacgatctcttcagtaacatcttcgcaaaaagcacaggaagaaagcatggcaagtccttttgcaacgtacggaaaagaatgtgtttccgatgatctcatctcgtcgggtttgaaaatcgaggacgaagatcgtttgacaggctctgtttcttacttgacctactggaagtacttgacatacggggtatcaaagttgctcatggttgttatggcagttttaattattttacctgaaggagcagtactagcttccagcttttggcttgcgcactggaccaaattaccatggcaacaccaacaggatccttataacgtctatgtctacgttggtctggcgggtggttgtttgatctcggctctatgtcgctcctttctttccttccatggactcatccactgctcgtccaacctgcatacggcaatgttgacctcactcttgaaaagcccggttcgtttctttgatgcgaatcccgcaggtcggatcttgaatcgatttgctaatgacattggttgcatggatgaagtcttgccgtatacgctattagaggctattcaatacattatgtttaccataagtattttggttttggtatcagttgcaaacgtgtgggtgatcggagcaagtgtccctttcgtggccctgtcgctgtatcttagcaggcgccacattagggctgcacgtgagatcaagagaattgaagcgattacgagcagtcctgtctgtacacacgtcgctgatacaattcaagggattactacaatacacgtttacaaaaggcaagaagacttcatagagcgtttctacagttatcaagatcggaacagtaaggcttggtactgctactgcagttctctcaagtgggtcggtctccgtcttgacatattgagctcatttcttctcgttgttgtcacactggcagccatatttctctcgggcgatgcagctctatctggtttatcgataagctactgccttcagctaactacaactgtgcagtggatgctgcaagcggttggagaagcggagaattacatgacatctgtagaacgagttttgacttacgcacagcttccgcccgaacccggttatggcacatctcacccacagactcctgagcgatggccagaaaaaggctctgttactttcaaagatgtctccctgcgttattataaggatgggccttccgttttgaaaggcattaactttggtgtctctcctggagagaaaataggaattgttggacgtactggtgctggcaagtcttcacttctcgcgtgcttgttgcgaatgcctgcgaacaccgaaggcgaaataatcatcgacggaatgtccgtggctgacctcaacgttcaagtcgttcgctctgcaatcgcaattatgatcgttttcgaccataatctgcggttatccatcagcggtaatccatttgagatggattaa

Transcript

evm.model.Ap10.1260

ATGGGTTGCCATGTCTCCAACATTCGTTACGAGAAGCTGGATGACAAACCAGATGAAACTAAAACATTCTTTGGTAGGCTAACATTTGGTTTTCTGTCGGGTTTAATCAAAACTGGTAACACCAGGCCTTTAGAAGAAGCCGATCTGTCTTCTCTGGAACTTGAAAGCACGCAATATTTGACCGAAAAACTTGTAAAAGAATGGGAAAATGAGATAAAAGTAAAAGGAGACAGCTGTTCTCGACCGCGTTTGTGGAGCGCTCTGCTCAGAGCCGTCGACAAAAAGCTCATGACGATGATTGTACTTCTGGCCATTTTAAGCTCCTTCTGCAGACTTATTCAACCAGTTGTTCTCAGCTTTCTCCTGGAAGAATTGACTACTGGTTCACCCTTTGATGCAAGCATATTGTGTCTTTATTCAGCTCTTCTATGTTTCAGCTCTTTTGTTCAAACATTTGCTGTGCATCACGCCACTTATGCCACGTTCACGATGGCGGTTCAAGTCAAGGCCTCCTTGATCGGACTGGTGTACAAAAAGATCATGATTAAAAAACATCACATCCTGGCTGAGAAATCTTCAGGCTTTGCCATAAACTTGATTACAAAAGATATGATCCATATCCATCAAGCCATTAGCAACTTAGATTCGCTTACAGCTCCCATAGAGATACTTGTCGTCTTTTGCCTGCTTTGGAAACTTGTCGGTTGGCAGACGTTCGGAGGGGTAGTCTTTTCGATAATTCTGATCGCTTACCAGACGGCGCTGGGAAATGTTTTCAAAATCCTCCAAGAGAAAGTCGCCAGGCTGACCGACAGGAGACTGCGATTAATCTATGACGTAGTTTCCGGTATCCGTGTGCTCAAGATGAATGCATGGGAATGGTGCTTCCGTGATCTGGTTTCCAGTGTTAGGCGGTGTGGAGAAACCGCAAGGCACGGTCGAAAAGTTTACTACGTAGGACGTTTCTATAGTTACCATGTGATCGCCAGCAGTAACAACGAAAGTGCTCCGTCATCGCCAGAGATCGCACTACCAAGCGAAAATTCAAACAGTCGTTTGTCATCTTATGGAAGACAAGATTTAAAGGTTATTGATCTTCTTTTATCTGAGCTTAACCTTGTTTACAAGAAAGGAGTTATCTTGGCTGGTTACACCTCTGCGTATTCCTGTTACCCAATAATTTCCAGTTTTGTCTCTTTATTTCCGTTCTTAATGGATGGGAATCATCTGACACCTCAGAACGTCTTCACCACTCTGGCTCTCCTTGGTGTGCTTCAAAAACCAGTAACGATTCTATTTGCCTATGAGTTGCGTGCTCTGTTTCAAGCAACAACAACGCTTGAAAGAATCGAGTCCTTTCTTTTCGAAGATAACTCTGGCAATATTCACCCAAACAGTTACAATGAAGAACTTGGTAACCAGTTGCAGTGTCACGGAAAGAAATCAGCACTGACAAGCCATGTTTGTAATCAAGGAAAACCGTTCCTTTGTTTAAACAACGTGCATTTCCGTCCATGGGATGATTCCAACTATTTAAACATGTGTATATCTGATAGTCGATTGATTGGAATAACAGGTCCAGTAGGATGTGGCAAAACTTCTCTATTTCACATTATCATCGGCGAAATACCATCAGCCGTCGGACAAATTGCTCACCAAGGACGAATCGCTTATGTTTGCCAAACACCCTGGGTGTTTTCAGGAACGGTCCGTGAGAATATTCTATTTGGGAAGAAGTATAACCATGGAGCTTTTCAACGAGTTGTAGATGTTTGTTCCTTGAAAGAAGATCTCGATTCGCTTTCAAGTGGTGATATGACCCATGTCGGTGAACGCGGTGTAAGTTTGAGTGGCGGTCAGCGGGCTCGGATTAACTTGGCACGCGCAGTGTATTCTGATGCAGATATTTATCTACTGGATGATCCTCTTAGCGCTGTTGACGCAAAAGTGTCAAATGAACTATTTGAACGATGCATTTGTGGCGCTTTGTCTGATCGCATTCGGCTCTTCATAACTCATCAATCGTTTTGCCTCCAGAAGACGGATTTGGTTCTTTTGATGGGCAAGGACGGTGCATTGTCACAAGGCACGTTCAAGAAACTATGTGAATCGGGACAATTTTCTACGATCTCTTCAGTAACATCTTCGCAAAAAGCACAGGAAGAAAGCATGGCAAGTCCTTTTGCAACGTACGGAAAAGAATGTGTTTCCGATGATCTCATCTCGTCGGGTTTGAAAATCGAGGACGAAGATCGTTTGACAGGCTCTGTTTCTTACTTGACCTACTGGAAGTACTTGACATACGGGGTATCAAAGTTGCTCATGGTTGTTATGGCAGTTTTAATTATTTTACCTGAAGGAGCAGTACTAGCTTCCAGCTTTTGGCTTGCGCACTGGACCAAATTACCATGGCAACACCAACAGGATCCTTATAACGTCTATGTCTACGTTGGTCTGGCGGGTGGTTGTTTGATCTCGGCTCTATGTCGCTCCTTTCTTTCCTTCCATGGACTCATCCACTGCTCGTCCAACCTGCATACGGCAATGTTGACCTCACTCTTGAAAAGCCCGGTTCGTTTCTTTGATGCGAATCCCGCAGGTCGGATCTTGAATCGATTTGCTAATGACATTGGTTGCATGGATGAAGTCTTGCCGTATACGCTATTAGAGGCTATTCAATACATTATGTTTACCATAAGTATTTTGGTTTTGGTATCAGTTGCAAACGTGTGGGTGATCGGAGCAAGTGTCCCTTTCGTGGCCCTGTCGCTGTATCTTAGCAGGCGCCACATTAGGGCTGCACGTGAGATCAAGAGAATTGAAGCGATTACGAGCAGTCCTGTCTGTACACACGTCGCTGATACAATTCAAGGGATTACTACAATACACGTTTACAAAAGGCAAGAAGACTTCATAGAGCGTTTCTACAGTTATCAAGATCGGAACAGTAAGGCTTGGTACTGCTACTGCAGTTCTCTCAAGTGGGTCGGTCTCCGTCTTGACATATTGAGCTCATTTCTTCTCGTTGTTGTCACACTGGCAGCCATATTTCTCTCGGGCGATGCAGCTCTATCTGGTTTATCGATAAGCTACTGCCTTCAGCTAACTACAACTGTGCAGTGGATGCTGCAAGCGGTTGGAGAAGCGGAGAATTACATGACATCTGTAGAACGAGTTTTGACTTACGCACAGCTTCCGCCCGAACCCGGTTATGGCACATCTCACCCACAGACTCCTGAGCGATGGCCAGAAAAAGGCTCTGTTACTTTCAAAGATGTCTCCCTGCGTTATTATAAGGATGGGCCTTCCGTTTTGAAAGGCATTAACTTTGGTGTCTCTCCTGGAGAGAAAATAGGAATTGTTGGACGTACTGGTGCTGGCAAGTCTTCACTTCTCGCGTGCTTGTTGCGAATGCCTGCGAACACCGAAGGCGAAATAATCATCGACGGAATGTCCGTGGCTGACCTCAACGTTCAAGTCGTTCGCTCTGCAATCGCAATTATGATCGTTTTCGACCATAATCTGCGGTTATCCATCAGCGGTAATCCATTTGAGATGGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9Q236	ATP-binding cassette sub-family C member 4 OS=Mus musculus OX=10090 GN=Abcc4 PE=1 SV=1
O15439	ATP-binding cassette sub-family C member 4 OS=Homo sapiens OX=9606 GN=ABCC4 PE=1 SV=3
F1M3J4	ATP-binding cassette subfamily C member 4 OS=Rattus norvegicus OX=10116 GN=Abcc4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR050173 all species →	Family	ATP-binding cassette transporter C	Interproscan
IPR044746 all species →	Domain	ABC transporter C family, six-transmembrane helical domain 1	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR044726 all species →	Domain	ABC transporter C family, six-transmembrane helical domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223 all species →	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1260.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.