Gene detail

Detailed information of evm.model.Ap10.1447 in Astrangia poculata

Genomic Location: Ap10:14339376...14340227
NR annotation: KAJ7379428.1, Carbohydrate sulfotransferase 14 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q805E5	Carbohydrate sulfotransferase 14 OS=Danio rerio OX=7955 GN=chst14 PE=2 SV=1
P69478	Carbohydrate sulfotransferase 11 OS=Rattus norvegicus OX=10116 GN=Chst11 PE=1 SV=1
Q9JME2	Carbohydrate sulfotransferase 11 OS=Mus musculus OX=10090 GN=Chst11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000287 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018011 all species →	Family	Carbohydrate sulfotransferase 8-10	Interproscan
IPR005331 all species →	Family	Sulfotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12137 all species →	CARBOHYDRATE SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016051 all species →	Biological Process	carbohydrate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01017	CHST11; chondroitin 4-sulfotransferase 11	EC:2.8.2.5	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap10.1447 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

22TPM > 0

4Conditions

1,023.8Max TPM

195.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	10	396.78	1,023.80
whole organism · heat control	12	6	137.53	430.21
whole organism · cold challenge	12	4	108.81	689.59
whole organism · heat challenge	11	2	97.92	863.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,023.80
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,012.67
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	867.22
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	755.23
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	561.32
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	336.19
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	304.61
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	260.57
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	247.89
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	185.43
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	430.21
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	420.96
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	310.48
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	218.24
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	142.83
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	127.63
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	689.59
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	320.85
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	202.19
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	93.06
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	863.69
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	213.39
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.