Gene detail

Detailed information of evm.model.Ap10.1487 in Astrangia poculata

Genomic Location: Ap10:14870819...14876090
NR annotation: XP_020622924.1, ubiquitin-conjugating enzyme E2 N-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQX9	Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus OX=10116 GN=Ube2n PE=1 SV=1
Q0P5K3	Ubiquitin-conjugating enzyme E2 N OS=Bos taurus OX=9913 GN=UBE2N PE=2 SV=1
P61088	Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens OX=9606 GN=UBE2N PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008277 (this species only)
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species
Ubiquitin family	E2\|UEV\|UEV · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023313 all species →	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24068 all species →	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006301 all species →	Biological Process	postreplication repair	Interproscan
GO:0061631 all species →	Molecular Function	ubiquitin conjugating enzyme activity	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10580	UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N	EC:2.3.2.23	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.