Detailed information of evm.model.Ap10.1557_evm.model.Ap10.1544.1.5f1689ee in Astrangia poculata

Genomic Location: Ap10:15358875...15377539
NR annotation: XP_020600446.1, urocanate hydratase-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8VC12Urocanate hydratase OS=Mus musculus OX=10090 GN=Uroc1 PE=1 SV=2
Q96N76Urocanate hydratase OS=Homo sapiens OX=9606 GN=UROC1 PE=1 SV=1
Q86AX3Probable urocanate hydratase OS=Dictyostelium discoideum OX=44689 GN=uroc1 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003393 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17391
all species →		Urocanase_NUrocanase N-terminal domainDomainInterproscan
PF01175
all species →		UrocanaseUrocanase Rossmann-like domainDomainInterproscan
PF17392
all species →		Urocanase_CUrocanase C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023637
all species →		FamilyUrocanaseInterproscan
IPR036190
all species →		Homologous_superfamilyUrocanase superfamilyInterproscan
IPR023636
all species →		Conserved_siteUrocanase conserved siteInterproscan
IPR035400
all species →		DomainUrocanase, N-terminal domainInterproscan
IPR035085
all species →		DomainUrocanase, Rossmann-like domainInterproscan
IPR038364
all species →		Homologous_superfamilyUrocanase, central domain superfamilyInterproscan
IPR035401
all species →		DomainUrocanase, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12216
all species →		UROCANATE HYDRATASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016153
all species →		Molecular Functionurocanate hydratase activityInterproscan
GO:0006548
all species →		Biological ProcessL-histidine catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01712hutU, UROC1; urocanate hydrataseEC:4.2.1.49
Histidine metabolismko00340deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap10.1557_evm.model.Ap10.1544.1.5f1689ee across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP