Gene detail

Detailed information of evm.model.Ap10.1558 in Astrangia poculata

Genomic Location: Ap10:15378105...15393645
NR annotation: XP_022797479.1, LOW QUALITY PROTEIN: histidine ammonia-lyase-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35492	Histidine ammonia-lyase OS=Mus musculus OX=10090 GN=Hal PE=1 SV=1
P21213	Histidine ammonia-lyase OS=Rattus norvegicus OX=10116 GN=Hal PE=1 SV=1
P42357	Histidine ammonia-lyase OS=Homo sapiens OX=9606 GN=HAL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002235 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00221 all species →	Lyase_aromatic	Aromatic amino acid lyase	Family	Interproscan
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005921 all species →	Family	Histidine ammonia-lyase	Interproscan
IPR001106 all species →	Family	Aromatic amino acid lyase	Interproscan
IPR022313 all species →	Active_site	Phenylalanine/histidine ammonia-lyases, active site	Interproscan
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10362 all species →	HISTIDINE AMMONIA-LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004397 all species →	Molecular Function	histidine ammonia-lyase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006548 all species →	Biological Process	L-histidine catabolic process	Interproscan
GO:0016841 all species →	Molecular Function	ammonia-lyase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01745	hutH, HAL; histidine ammonia-lyase	EC:4.3.1.3	Histidine metabolism	ko00340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.