Detailed information of evm.model.Ap10.1560 in Astrangia poculata

Genomic Location: Ap10:15407962...15417970
NR annotation: XP_020600443.1, low-density lipoprotein receptor-related protein 4-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P16109P-selectin OS=Homo sapiens OX=9606 GN=SELP PE=1 SV=4
O88572Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000594 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00084
all species →		SushiSushi repeat (SCR repeat)DomainInterproscan
PF00058
all species →		Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan
PF00531
all species →		DeathDeath domainDomainInterproscan
PF14670
all species →		FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050778
all species →		FamilyCueball/EGF/LRP/NidogenInterproscan
IPR011029
all species →		Homologous_superfamilyDeath-like domain superfamilyInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR000033
all species →		RepeatLDLR class B repeatInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000488
all species →		DomainDeath domainInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46513
all species →		VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0017147
all species →		Molecular FunctionWnt-protein bindingInterproscan
GO:0042813
all species →		Molecular FunctionWnt receptor activityInterproscan
GO:0060070
all species →		Biological Processcanonical Wnt signaling pathwayInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0007165
all species →		Biological Processsignal transductionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap10.1560.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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